Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17560

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,799,660	-				-0.2
3,799,660	-				-0.4
3,799,827	-		RR42_RS17555	0.22	-0.5
3,800,123	-		RR42_RS17555	0.74	-0.4
3,800,225	-				-1.1
3,800,269	-				-2.1
3,800,269	-				-1.8
3,800,269	-				-4.3
3,800,269	-				-4.8
3,800,280	-				-0.0
3,800,322	-				-0.2
3,800,446	+				-3.4
3,800,446	+				-1.8
3,800,446	+				-0.5
3,800,446	+				-1.6
3,800,446	+				-3.2
3,800,446	+				-2.1
3,800,446	+				-0.9
3,800,446	+				-1.6
3,800,447	-				+0.2
3,800,447	-				-3.1
3,800,447	-				-2.8
3,800,447	-				-3.4
3,800,447	-				-3.1
3,800,447	-				-2.9
3,800,451	+				-1.1
3,800,452	-				-4.1
3,800,501	+				-2.0
3,800,502	-				-0.8
3,800,502	-				-1.5
3,800,850	+		RR42_RS17560	0.89	-4.0
3,800,850	+		RR42_RS17560	0.89	-4.1
3,800,850	+		RR42_RS17560	0.89	-2.4
3,800,851	-		RR42_RS17560	0.89	-5.0
3,800,896	-				-2.1
3,800,954	+				+0.5
3,800,980	+				+2.8
3,800,980	+				+0.2
3,800,980	+				-1.5
3,800,980	+				-2.1
3,800,980	+				-1.0
3,800,981	-				+0.1
3,800,981	-				-0.2
3,800,981	-				+0.1
3,800,981	-				-0.5
3,801,001	+				-2.4
3,801,001	+				-2.9
3,801,001	+				-4.5
3,801,001	+				-0.1
3,801,001	+				+0.1
3,801,002	-				-0.5
3,801,002	-				-0.4
3,801,171	+		RR42_RS17565	0.20	-2.9
3,801,171	+		RR42_RS17565	0.20	-4.0
3,801,171	+				+1.2
3,801,171	+		RR42_RS17565	0.20	-3.0
3,801,171	+		RR42_RS17565	0.20	-5.6
3,801,171	+		RR42_RS17565	0.20	-1.1
3,801,172	-		RR42_RS17565	0.21	-1.4
3,801,172	-		RR42_RS17565	0.21	-3.3
3,801,172	-		RR42_RS17565	0.21	-0.4
3,801,172	-		RR42_RS17565	0.21	-2.7
3,801,172	-		RR42_RS17565	0.21	-4.1
3,801,172	-		RR42_RS17565	0.21	-2.1
3,801,172	-				-0.4
3,801,172	-		RR42_RS17565	0.21	-4.0
3,801,172	-		RR42_RS17565	0.21	-4.6
3,801,288	-		RR42_RS17565	0.32	-5.5
3,801,309	+		RR42_RS17565	0.34	-3.9
3,801,309	+		RR42_RS17565	0.34	-4.2
3,801,310	-		RR42_RS17565	0.34	-4.7
3,801,310	-		RR42_RS17565	0.34	-2.3
3,801,310	-		RR42_RS17565	0.34	-3.5
3,801,310	-		RR42_RS17565	0.34	-3.7
3,801,387	+		RR42_RS17565	0.42	-1.6
3,801,387	+		RR42_RS17565	0.42	-1.1
3,801,387	+		RR42_RS17565	0.42	-3.3
3,801,387	+		RR42_RS17565	0.42	-4.3
3,801,387	+		RR42_RS17565	0.42	-2.8
3,801,388	-		RR42_RS17565	0.42	-4.1
3,801,388	-		RR42_RS17565	0.42	-3.5
3,801,388	-		RR42_RS17565	0.42	-3.2
3,801,389	-		RR42_RS17565	0.42	-1.6
3,801,430	+		RR42_RS17565	0.47	-4.4
3,801,580	+		RR42_RS17565	0.62	-1.1
3,801,580	+		RR42_RS17565	0.62	-3.6
3,801,580	+		RR42_RS17565	0.62	-0.4
3,801,580	+		RR42_RS17565	0.62	-1.9
3,801,580	+		RR42_RS17565	0.62	-3.6
3,801,580	+				+1.2
3,801,580	+		RR42_RS17565	0.62	-3.1
3,801,580	+		RR42_RS17565	0.62	-0.2
3,801,581	-		RR42_RS17565	0.62	-3.4
3,801,581	-		RR42_RS17565	0.62	-5.4
3,801,581	-		RR42_RS17565	0.62	-1.4
3,801,581	-		RR42_RS17565	0.62	-3.8
3,801,617	-		RR42_RS17565	0.65	-5.0
3,801,871	+				-2.5
3,801,871	+				-2.8
3,801,871	+				-5.6
3,801,871	+				-0.9
3,801,871	+				-4.1
3,801,872	-				-4.9
3,801,872	-				-4.4
3,801,872	-				-3.4
3,801,891	+				-4.3
3,801,891	+				-5.5
3,801,891	+				-3.0
3,801,891	+				-5.7
3,801,891	+				-4.9
3,801,892	-				-4.5
3,801,892	-				-4.9
3,801,892	-				-4.8
3,801,892	-				-4.2
3,801,892	-				-3.7
3,801,892	-				-3.4