Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17505

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,786,630	-		RR42_RS17490	0.88	+0.2
3,786,632	-		RR42_RS17490	0.88	+1.7
3,786,632	-		RR42_RS17490	0.88	-0.1
3,786,857	-				-0.3
3,786,857	-				-2.6
3,786,857	-				-0.5
3,786,889	+		RR42_RS17495	0.13	+1.4
3,786,889	+		RR42_RS17495	0.13	-0.6
3,786,889	+		RR42_RS17495	0.13	+0.1
3,786,889	+		RR42_RS17495	0.13	-0.8
3,786,890	-		RR42_RS17495	0.14	-0.1
3,787,022	+		RR42_RS17495	0.86	-1.4
3,787,051	+				-0.1
3,787,052	-				-0.0
3,787,055	+				-1.6
3,787,055	+				-0.1
3,787,055	+				+0.1
3,787,055	+				-2.4
3,787,055	+				+0.2
3,787,055	+				-0.4
3,787,055	+				-0.6
3,787,055	+				-1.0
3,787,055	+				+0.2
3,787,055	+				-0.2
3,787,055	+				-1.4
3,787,055	+				-0.3
3,787,056	-				-0.4
3,787,056	-				-1.1
3,787,056	-				+0.4
3,787,056	-				+0.0
3,787,237	+		RR42_RS17500	0.16	+0.8
3,787,539	+				-0.0
3,787,776	+		RR42_RS17505	0.18	-0.2
3,787,777	-		RR42_RS17505	0.18	-0.0
3,787,777	-		RR42_RS17505	0.18	+0.8
3,788,022	+		RR42_RS17505	0.35	+0.8
3,788,023	-		RR42_RS17505	0.35	-0.8
3,788,346	+		RR42_RS17505	0.57	-0.1
3,788,346	+		RR42_RS17505	0.57	-0.4
3,788,346	+		RR42_RS17505	0.57	+0.1
3,788,347	-		RR42_RS17505	0.57	+0.6
3,788,347	-		RR42_RS17505	0.57	-0.2
3,788,347	-		RR42_RS17505	0.57	-0.6
3,788,347	-		RR42_RS17505	0.57	+1.3
3,788,604	+		RR42_RS17505	0.75	+0.6
3,788,605	-		RR42_RS17505	0.75	-0.4
3,788,605	-		RR42_RS17505	0.75	-2.2
3,788,605	-		RR42_RS17505	0.75	-1.1
3,788,676	+		RR42_RS17505	0.80	-0.9
3,788,823	+		RR42_RS17505	0.90	+0.2
3,788,823	+		RR42_RS17505	0.90	-0.4
3,788,824	-		RR42_RS17505	0.90	-0.3
3,788,824	-		RR42_RS17505	0.90	-0.7
3,788,824	-		RR42_RS17505	0.90	-1.0
3,788,824	-		RR42_RS17505	0.90	+0.2
3,788,824	-		RR42_RS17505	0.90	-2.5
3,788,824	-		RR42_RS17505	0.90	-1.6
3,788,898	+				+0.2
3,788,899	-				-0.9
3,788,899	-				-0.1
3,788,971	-				-1.5
3,788,971	-				-0.1
3,788,971	-				-0.3
3,788,971	-				+0.5
3,788,971	-				-0.0
3,788,971	-				-0.4
3,789,091	-				-0.2
3,789,091	-				+0.3
3,789,091	-				-0.6
3,789,091	-				+0.1
3,789,091	-				+0.1
3,789,091	-				+0.2
3,789,092	+				-0.0
3,789,092	+				-0.1
3,789,092	+				-0.2
3,789,092	+				-0.3
3,789,093	-				+0.4
3,789,093	-				-0.3
3,789,093	-				+1.0
3,789,150	-				+0.1
3,789,341	+				+0.8
3,789,341	+				+0.8
3,789,442	-		RR42_RS17510	0.17	+0.2
3,789,442	-		RR42_RS17510	0.17	-0.5
3,789,561	+		RR42_RS17510	0.28	+1.1
3,789,561	+		RR42_RS17510	0.28	+0.1
3,789,735	+		RR42_RS17510	0.45	+0.6
3,789,758	+		RR42_RS17510	0.47	+0.9
3,789,758	+		RR42_RS17510	0.47	+0.7
3,789,759	-		RR42_RS17510	0.47	+0.5
3,789,759	-		RR42_RS17510	0.47	+0.5
3,789,759	-		RR42_RS17510	0.47	-1.6
3,789,804	+		RR42_RS17510	0.51	+0.7
3,789,928	-		RR42_RS17510	0.63	-0.7
3,789,928	-		RR42_RS17510	0.63	+1.0
3,789,930	+		RR42_RS17510	0.63	+0.3
3,789,930	+		RR42_RS17510	0.63	+0.8
3,789,930	+		RR42_RS17510	0.63	+0.9
3,789,930	+		RR42_RS17510	0.63	+0.9
3,789,930	+		RR42_RS17510	0.63	+1.4
3,789,930	+		RR42_RS17510	0.63	-0.4
3,789,931	-		RR42_RS17510	0.63	-1.0
3,789,931	-		RR42_RS17510	0.63	+0.5
3,789,936	+		RR42_RS17510	0.64	+0.2