Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17100

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,703,867	+				-0.2
3,703,867	+				-0.0
3,703,868	-				+0.2
3,703,868	-				-0.1
3,703,868	-				+1.1
3,703,903	-				-1.3
3,704,211	-		RR42_RS17095	0.36	-0.4
3,704,262	+		RR42_RS17095	0.42	+0.4
3,704,262	+		RR42_RS17095	0.42	-1.8
3,704,262	+		RR42_RS17095	0.42	+1.2
3,704,262	+		RR42_RS17095	0.42	+1.3
3,704,262	+		RR42_RS17095	0.42	+1.5
3,704,263	-		RR42_RS17095	0.42	+0.9
3,704,292	+		RR42_RS17095	0.45	+0.7
3,704,493	+		RR42_RS17095	0.69	-0.5
3,704,494	-		RR42_RS17095	0.69	+1.3
3,704,552	+		RR42_RS17095	0.76	+1.3
3,704,555	+		RR42_RS17095	0.77	+0.6
3,704,555	+		RR42_RS17095	0.77	+0.4
3,704,601	-		RR42_RS17095	0.82	+0.3
3,704,734	+				-0.0
3,704,734	+				+1.1
3,704,992	+		RR42_RS17100	0.22	+0.4
3,704,993	-		RR42_RS17100	0.22	-0.2
3,704,993	-		RR42_RS17100	0.22	-0.5
3,704,993	-		RR42_RS17100	0.22	-0.1
3,705,121	+		RR42_RS17100	0.35	+0.1
3,705,135	+		RR42_RS17100	0.36	+1.9
3,705,136	-		RR42_RS17100	0.36	-0.2
3,705,136	-		RR42_RS17100	0.36	-0.3
3,705,187	+		RR42_RS17100	0.42	-0.8
3,705,187	+		RR42_RS17100	0.42	-0.3
3,705,188	-		RR42_RS17100	0.42	-2.5
3,705,188	-		RR42_RS17100	0.42	-1.0
3,705,188	-		RR42_RS17100	0.42	-0.1
3,705,188	-		RR42_RS17100	0.42	-0.6
3,705,188	-		RR42_RS17100	0.42	-0.8
3,705,249	-		RR42_RS17100	0.48	-0.1
3,705,274	+		RR42_RS17100	0.50	+0.7
3,705,407	+		RR42_RS17100	0.63	+1.9
3,705,408	-		RR42_RS17100	0.63	+0.7
3,705,408	-		RR42_RS17100	0.63	-1.3
3,705,412	+		RR42_RS17100	0.64	-0.5
3,705,427	+		RR42_RS17100	0.65	+0.6
3,705,428	-		RR42_RS17100	0.65	+0.0
3,705,428	-		RR42_RS17100	0.65	+0.0
3,705,868	-				+0.2
3,705,883	-				-0.7
3,705,934	-				-0.4
3,705,934	-				-0.4
3,706,459	+		RR42_RS17105	0.23	-1.9
3,706,460	-		RR42_RS17105	0.23	-2.8
3,706,498	+		RR42_RS17105	0.25	+0.2
3,706,498	+		RR42_RS17105	0.25	-2.5
3,706,508	-		RR42_RS17105	0.25	-2.0
3,706,605	+		RR42_RS17105	0.29	-3.3
3,706,605	+		RR42_RS17105	0.29	-3.1
3,706,605	+		RR42_RS17105	0.29	-0.0
3,706,606	-		RR42_RS17105	0.29	-2.6
3,706,653	+		RR42_RS17105	0.31	-4.0
3,706,653	+		RR42_RS17105	0.31	-0.8
3,706,654	-		RR42_RS17105	0.31	-2.1