Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16640

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,605,603	+		RR42_RS16635	0.82	-0.0
3,605,604	-		RR42_RS16635	0.82	-0.2
3,605,604	-		RR42_RS16635	0.82	+0.0
3,605,668	+				-0.1
3,605,668	+				-0.0
3,605,669	-				-0.4
3,605,669	-				-0.1
3,605,782	+				-0.7
3,605,782	+				+0.1
3,605,861	-				+0.2
3,605,861	-				+0.7
3,606,002	-				+0.4
3,606,034	+				-0.7
3,606,034	+				+1.2
3,606,075	+				+0.3
3,606,330	-				-0.0
3,606,369	+				-0.2
3,606,370	-				+2.0
3,606,460	+				+0.3
3,606,461	-				+0.6
3,606,503	-				+0.1
3,606,633	-				-0.7
3,606,811	-		RR42_RS16640	0.24	+0.8
3,607,231	+		RR42_RS16640	0.71	+1.6
3,607,529	-				-0.2
3,607,540	+				+0.1
3,607,563	-				-0.1
3,607,583	-				-0.4
3,607,604	-				+0.4
3,607,612	+				-0.2
3,607,704	+				-0.3
3,607,705	-				+1.1
3,607,889	+		RR42_RS16645	0.30	+0.1
3,607,965	-		RR42_RS16645	0.38	+0.4
3,607,965	-		RR42_RS16645	0.38	+0.9
3,607,965	-		RR42_RS16645	0.38	-0.4
3,608,130	+		RR42_RS16645	0.56	-0.3
3,608,130	+		RR42_RS16645	0.56	+0.6
3,608,131	-		RR42_RS16645	0.56	+1.1
3,608,131	-		RR42_RS16645	0.56	+0.8
3,608,132	+		RR42_RS16645	0.56	+0.0
3,608,132	+		RR42_RS16645	0.56	-1.2
3,608,298	+		RR42_RS16645	0.74	+0.3
3,608,340	+		RR42_RS16645	0.78	-1.0
3,608,340	+		RR42_RS16645	0.78	+0.5
3,608,341	-		RR42_RS16645	0.78	-2.8
3,608,341	-		RR42_RS16645	0.78	-1.4
3,608,341	-		RR42_RS16645	0.78	+2.0