Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16450

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,559,932	+				+0.4
3,559,989	+				-2.2
3,560,112	-				+0.2
3,560,280	-		RR42_RS16445	0.30	-0.2
3,560,382	+		RR42_RS16445	0.43	+0.4
3,560,391	+		RR42_RS16445	0.44	+1.0
3,560,391	+		RR42_RS16445	0.44	-0.9
3,560,392	-		RR42_RS16445	0.45	+0.4
3,560,672	-		RR42_RS16445	0.81	+0.6
3,560,802	-				+1.1
3,560,802	-				+0.3
3,560,957	+				+0.8
3,561,008	+		RR42_RS16450	0.15	+0.4
3,561,075	+		RR42_RS16450	0.26	-1.4
3,561,075	+		RR42_RS16450	0.26	-0.2
3,561,098	+		RR42_RS16450	0.30	-0.3
3,561,098	+		RR42_RS16450	0.30	-1.1
3,561,238	-		RR42_RS16450	0.52	-0.2
3,561,239	+		RR42_RS16450	0.52	-0.4
3,561,240	-		RR42_RS16450	0.52	+0.8
3,561,371	+		RR42_RS16450	0.73	+0.1
3,561,371	+		RR42_RS16450	0.73	+0.1
3,561,372	-		RR42_RS16450	0.73	+0.1
3,561,476	-		RR42_RS16450	0.89	+1.1
3,561,513	-				+0.2
3,561,527	-				-1.4
3,561,537	+				+0.4
3,561,538	-				+0.9
3,561,606	+				+0.0
3,561,607	-				+0.0
3,561,630	-				-0.9
3,561,642	+				+0.1
3,561,642	+				+0.0
3,561,660	+				-3.1
3,562,077	+		RR42_RS16455	0.42	-0.7
3,562,099	+		RR42_RS16455	0.48	-1.9
3,562,100	-		RR42_RS16455	0.48	-0.3
3,562,120	+		RR42_RS16455	0.53	-0.0
3,562,218	+		RR42_RS16455	0.77	-0.3
3,562,219	-		RR42_RS16455	0.77	-0.2
3,562,279	+				+0.4
3,562,396	-				+0.0