Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16435

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,556,606	+				+0.7
3,556,737	+		RR42_RS16430	0.12	+0.2
3,556,926	+		RR42_RS16430	0.67	+1.1
3,556,927	-		RR42_RS16430	0.67	-0.9
3,556,927	-		RR42_RS16430	0.67	-0.9
3,556,927	-		RR42_RS16430	0.67	+0.2
3,556,927	-		RR42_RS16430	0.67	-1.2
3,557,081	+				-1.1
3,557,082	-				+0.4
3,557,142	-				-0.5
3,557,254	-				+0.0
3,557,268	+				-0.4
3,557,359	+				+0.8
3,557,369	+				+0.9
3,557,370	-				+0.0
3,557,712	+		RR42_RS16435	0.20	+0.2
3,557,716	+		RR42_RS16435	0.20	+1.3
3,557,716	+		RR42_RS16435	0.20	-1.4
3,557,727	+		RR42_RS16435	0.21	-0.3
3,557,935	+		RR42_RS16435	0.42	+0.4
3,557,935	+		RR42_RS16435	0.42	-1.3
3,558,002	+		RR42_RS16435	0.48	+0.4
3,558,058	-		RR42_RS16435	0.54	+0.3
3,558,073	-		RR42_RS16435	0.55	+0.7
3,558,142	-		RR42_RS16435	0.62	-0.4
3,558,239	+		RR42_RS16435	0.72	-1.2
3,558,620	+				+0.6
3,558,620	+				+1.6
3,558,723	+		RR42_RS16440	0.10	+0.5
3,558,723	+		RR42_RS16440	0.10	-0.2
3,558,785	+		RR42_RS16440	0.15	-0.4
3,558,785	+		RR42_RS16440	0.15	-1.2
3,558,785	+		RR42_RS16440	0.15	+0.4
3,558,786	-		RR42_RS16440	0.15	-0.0
3,558,786	-		RR42_RS16440	0.15	-0.5
3,559,105	-		RR42_RS16440	0.37	-0.3
3,559,150	+		RR42_RS16440	0.40	-1.5
3,559,150	+		RR42_RS16440	0.40	+0.7
3,559,150	+		RR42_RS16440	0.40	+0.3
3,559,284	+		RR42_RS16440	0.49	+0.1