Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15890

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,433,378	+		RR42_RS15885	0.59	+1.9
3,433,379	-		RR42_RS15885	0.59	+1.0
3,433,438	+		RR42_RS15885	0.63	+1.7
3,433,438	+		RR42_RS15885	0.63	-0.0
3,433,439	-		RR42_RS15885	0.63	-0.9
3,433,480	+		RR42_RS15885	0.66	-0.1
3,433,481	-		RR42_RS15885	0.66	-1.3
3,433,521	-		RR42_RS15885	0.68	+1.3
3,433,639	+		RR42_RS15885	0.76	+1.0
3,433,640	-		RR42_RS15885	0.76	+0.7
3,433,640	-		RR42_RS15885	0.76	+1.5
3,433,730	-		RR42_RS15885	0.82	+0.5
3,433,730	-		RR42_RS15885	0.82	-2.0
3,433,788	+		RR42_RS15885	0.86	+0.3
3,433,789	-		RR42_RS15885	0.86	-0.9
3,433,789	-		RR42_RS15885	0.86	-0.2
3,433,831	+		RR42_RS15885	0.88	+1.7
3,433,831	+		RR42_RS15885	0.88	-0.5
3,433,831	+		RR42_RS15885	0.88	-0.5
3,433,831	+		RR42_RS15885	0.88	-0.9
3,433,832	-		RR42_RS15885	0.88	+0.3
3,433,832	-		RR42_RS15885	0.88	-0.5
3,433,832	-		RR42_RS15885	0.88	+1.5
3,433,832	-		RR42_RS15885	0.88	+0.1
3,433,832	-		RR42_RS15885	0.88	+0.4
3,433,832	-		RR42_RS15885	0.88	-0.1
3,433,835	+		RR42_RS15885	0.89	-0.3
3,433,835	+		RR42_RS15885	0.89	-0.1
3,433,835	+		RR42_RS15885	0.89	-1.5
3,433,835	+		RR42_RS15885	0.89	-0.9
3,433,835	+		RR42_RS15885	0.89	+0.1
3,433,835	+		RR42_RS15885	0.89	+0.5
3,433,835	+		RR42_RS15885	0.89	+0.0
3,433,835	+		RR42_RS15885	0.89	+0.7
3,433,836	-		RR42_RS15885	0.89	+1.8
3,433,836	-		RR42_RS15885	0.89	+0.8
3,433,836	-		RR42_RS15885	0.89	-3.4
3,433,836	-		RR42_RS15885	0.89	+0.6
3,433,836	-		RR42_RS15885	0.89	+0.1
3,433,836	-		RR42_RS15885	0.89	+0.3
3,433,836	-		RR42_RS15885	0.89	+1.3
3,433,836	-		RR42_RS15885	0.89	+0.6
3,433,836	-		RR42_RS15885	0.89	-1.0
3,433,836	-		RR42_RS15885	0.89	+1.6
3,433,836	-		RR42_RS15885	0.89	+0.2
3,433,836	-		RR42_RS15885	0.89	+0.3
3,433,836	-		RR42_RS15885	0.89	-0.7
3,433,836	-		RR42_RS15885	0.89	+0.1
3,433,889	+				+0.6
3,433,890	-				-0.7
3,433,928	+				-0.5
3,433,928	+				+0.3
3,433,928	+				+0.2
3,433,961	+				-0.4
3,434,102	-				+1.9
3,434,102	-				+0.2
3,434,506	+		RR42_RS15890	0.11	-2.6
3,434,507	-		RR42_RS15890	0.11	+1.7
3,434,547	+		RR42_RS15890	0.14	-2.5
3,434,547	+		RR42_RS15890	0.14	-4.3
3,434,548	-		RR42_RS15890	0.14	-3.3
3,434,548	-		RR42_RS15890	0.14	-4.0
3,434,548	-		RR42_RS15890	0.14	-3.1
3,434,584	+		RR42_RS15890	0.17	-2.6
3,434,585	-		RR42_RS15890	0.18	-0.4
3,434,585	-		RR42_RS15890	0.18	-2.0
3,434,675	-		RR42_RS15890	0.25	-1.4
3,434,764	+		RR42_RS15890	0.33	-1.2
3,434,764	+		RR42_RS15890	0.33	-1.9
3,434,883	+		RR42_RS15890	0.43	-3.5
3,434,883	+		RR42_RS15890	0.43	+0.1
3,435,473	-				-3.3
3,435,542	+				-2.2
3,435,542	+				-4.5
3,435,542	+				-1.5
3,435,543	-				-2.8
3,435,543	-				-0.9
3,435,543	-				-5.1
3,435,543	-				-1.0
3,435,547	-				-2.5
3,435,547	-				-3.9
3,435,547	-				-0.9
3,435,572	-				-0.9
3,435,703	+				-3.9
3,435,703	+				-3.2
3,436,097	+		RR42_RS15895	0.24	-3.6
3,436,098	-		RR42_RS15895	0.24	-4.0
3,436,210	+		RR42_RS15895	0.30	-3.7
3,436,210	+		RR42_RS15895	0.30	-3.2
3,436,210	+		RR42_RS15895	0.30	-1.9
3,436,210	+		RR42_RS15895	0.30	-3.2
3,436,210	+		RR42_RS15895	0.30	-1.4
3,436,210	+		RR42_RS15895	0.30	-2.9
3,436,210	+		RR42_RS15895	0.30	-1.4
3,436,210	+		RR42_RS15895	0.30	-0.4
3,436,210	+		RR42_RS15895	0.30	-1.4
3,436,211	-		RR42_RS15895	0.30	-1.3
3,436,211	-		RR42_RS15895	0.30	-4.2
3,436,211	-		RR42_RS15895	0.30	+2.1
3,436,211	-		RR42_RS15895	0.30	-3.9
3,436,211	-		RR42_RS15895	0.30	-1.7
3,436,373	-		RR42_RS15895	0.37	-2.6