Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15880

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,430,907	-				-2.6
3,430,907	-				+0.5
3,430,907	-				-0.4
3,431,028	-		RR42_RS15875	0.31	-0.6
3,431,139	-		RR42_RS15875	0.50	-0.8
3,431,139	-		RR42_RS15875	0.50	+1.5
3,431,139	-		RR42_RS15875	0.50	-0.7
3,431,139	-		RR42_RS15875	0.50	-0.1
3,431,139	-		RR42_RS15875	0.50	+1.3
3,431,139	-		RR42_RS15875	0.50	-0.7
3,431,139	-		RR42_RS15875	0.50	+0.1
3,431,199	-		RR42_RS15875	0.61	-1.6
3,431,392	-				-2.6
3,431,530	-				+0.5
3,431,530	-				+0.1
3,431,530	-				+0.9
3,431,563	+				-2.0
3,431,564	-				-0.4
3,431,564	-				+2.1
3,431,720	-		RR42_RS15880	0.22	+1.1
3,431,720	-		RR42_RS15880	0.22	-0.9
3,431,872	+		RR42_RS15880	0.43	-0.7
3,431,872	+		RR42_RS15880	0.43	+1.3
3,431,872	+		RR42_RS15880	0.43	-1.7
3,431,873	-		RR42_RS15880	0.44	+0.5
3,431,873	-		RR42_RS15880	0.44	+0.4
3,432,019	+		RR42_RS15880	0.64	+1.9
3,432,020	-		RR42_RS15880	0.64	+0.5
3,432,020	-		RR42_RS15880	0.64	-0.1
3,432,085	+		RR42_RS15880	0.73	-0.1
3,432,085	+		RR42_RS15880	0.73	+0.1
3,432,085	+		RR42_RS15880	0.73	-0.2
3,432,086	-		RR42_RS15880	0.73	+1.7
3,432,290	+				+0.3
3,432,291	-				+2.5
3,432,300	-				-0.6
3,432,332	-				-0.3
3,432,411	+				-0.6
3,432,411	+				-0.5
3,432,412	-				-0.3
3,432,412	-				+0.5
3,432,412	-				+0.9
3,432,412	-				-1.6
3,432,412	-				+0.2
3,432,416	+				+0.4
3,432,417	-				+1.4
3,432,422	-				-1.0
3,432,574	+				+0.3
3,432,574	+				+0.2
3,432,575	-				+1.4
3,432,600	-				+0.6
3,432,600	-				-0.5
3,432,600	-				-1.2
3,432,823	+		RR42_RS15885	0.23	+0.1
3,432,973	+		RR42_RS15885	0.33	+0.2
3,432,974	-		RR42_RS15885	0.33	+2.3
3,432,974	-		RR42_RS15885	0.33	-0.2
3,432,974	-		RR42_RS15885	0.33	-0.6
3,433,037	-		RR42_RS15885	0.37	+0.5
3,433,069	+		RR42_RS15885	0.39	-0.5
3,433,069	+		RR42_RS15885	0.39	+0.2
3,433,069	+		RR42_RS15885	0.39	+0.3
3,433,070	-		RR42_RS15885	0.39	+0.4
3,433,070	-		RR42_RS15885	0.39	+1.0
3,433,070	-		RR42_RS15885	0.39	+0.9
3,433,070	-		RR42_RS15885	0.39	+0.1
3,433,240	+		RR42_RS15885	0.50	-0.7