Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15850

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,425,574	-				-2.0
3,425,579	-				-1.7
3,425,579	-				-1.7
3,425,601	-				+0.5
3,425,624	-				-2.3
3,425,634	-				-0.8
3,425,634	-				-1.8
3,425,634	-				+1.1
3,425,647	+				+1.5
3,425,661	+				+1.6
3,425,661	+				+1.8
3,425,661	+				+1.5
3,425,661	+				+1.2
3,425,661	+				+0.8
3,425,662	-				-2.0
3,425,662	-				+0.5
3,425,662	-				-1.5
3,425,662	-				-1.7
3,425,662	-				-1.7
3,425,662	-				-2.2
3,425,662	-				-1.0
3,425,707	+				+1.7
3,425,707	+				+1.5
3,425,707	+				+3.2
3,425,707	+				+1.7
3,425,707	+				-0.2
3,425,707	+				+1.8
3,425,707	+				+0.1
3,425,707	+				+2.0
3,425,707	+				+1.4
3,425,708	-				-2.0
3,425,708	-				-2.1
3,425,708	-				-1.5
3,425,708	-				-2.1
3,425,708	-				-1.8
3,425,708	-				-1.1
3,425,708	-				-0.8
3,425,792	+				+0.1
3,425,792	+				+1.4
3,425,793	-				-0.9
3,425,829	-		RR42_RS15845	0.13	-1.1
3,426,291	-		RR42_RS15845	0.68	-1.7
3,426,447	+		RR42_RS15845	0.87	+2.1
3,426,448	-		RR42_RS15845	0.87	+0.9
3,426,765	+		RR42_RS15850	0.24	+1.8
3,426,765	+		RR42_RS15850	0.24	+2.4
3,426,833	+		RR42_RS15850	0.32	+1.5
3,426,833	+		RR42_RS15850	0.32	+2.7
3,426,833	+		RR42_RS15850	0.32	+1.7
3,426,833	+		RR42_RS15850	0.32	+2.2
3,426,833	+		RR42_RS15850	0.32	+1.7
3,426,833	+		RR42_RS15850	0.32	+2.3
3,426,834	-		RR42_RS15850	0.32	+0.7
3,426,834	-		RR42_RS15850	0.32	+1.4
3,426,834	-		RR42_RS15850	0.32	+2.2
3,426,834	-		RR42_RS15850	0.32	+1.9
3,426,834	-		RR42_RS15850	0.32	+2.8
3,426,835	+		RR42_RS15850	0.32	+1.8
3,426,835	+		RR42_RS15850	0.32	+0.4
3,426,835	+		RR42_RS15850	0.32	+1.7
3,426,836	-		RR42_RS15850	0.32	+1.1
3,426,836	-		RR42_RS15850	0.32	+1.8
3,426,836	-		RR42_RS15850	0.32	+1.9
3,426,836	-		RR42_RS15850	0.32	+1.1
3,426,836	-		RR42_RS15850	0.32	+1.4
3,426,836	-		RR42_RS15850	0.32	+1.7
3,426,836	-		RR42_RS15850	0.32	+2.7
3,426,836	-		RR42_RS15850	0.32	+2.0
3,426,877	+		RR42_RS15850	0.37	+2.1
3,426,877	+		RR42_RS15850	0.37	+2.6
3,426,877	+		RR42_RS15850	0.37	+1.4
3,426,877	+		RR42_RS15850	0.37	+2.2
3,427,022	+		RR42_RS15850	0.54	+3.1
3,427,023	-		RR42_RS15850	0.54	+1.8
3,427,171	+		RR42_RS15850	0.72	+1.9
3,427,171	+		RR42_RS15850	0.72	+2.0
3,427,171	+		RR42_RS15850	0.72	+2.5
3,427,171	+		RR42_RS15850	0.72	+1.8
3,427,171	+		RR42_RS15850	0.72	+3.2
3,427,171	+		RR42_RS15850	0.72	+2.4
3,427,171	+		RR42_RS15850	0.72	+1.6
3,427,172	-		RR42_RS15850	0.72	+2.0
3,427,172	-		RR42_RS15850	0.72	+1.2
3,427,172	-		RR42_RS15850	0.72	+0.8
3,427,172	-		RR42_RS15850	0.72	+0.3
3,427,302	-		RR42_RS15850	0.88	+2.5
3,427,427	+				+0.8
3,427,484	+				+2.5