Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15705

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,392,882	+		RR42_RS15700	0.28	+0.1
3,392,882	+		RR42_RS15700	0.28	-1.5
3,392,882	+		RR42_RS15700	0.28	+0.3
3,392,882	+		RR42_RS15700	0.28	-0.2
3,392,883	-		RR42_RS15700	0.28	-0.7
3,392,883	-		RR42_RS15700	0.28	-0.4
3,392,883	-		RR42_RS15700	0.28	-2.5
3,392,883	-		RR42_RS15700	0.28	+1.4
3,392,883	-		RR42_RS15700	0.28	-0.9
3,392,936	+		RR42_RS15700	0.32	-0.5
3,392,936	+		RR42_RS15700	0.32	-0.5
3,392,936	+		RR42_RS15700	0.32	-0.9
3,392,937	-		RR42_RS15700	0.32	+1.9
3,392,937	-		RR42_RS15700	0.32	+0.4
3,392,956	+		RR42_RS15700	0.33	-1.0
3,393,151	-		RR42_RS15700	0.48	-1.2
3,393,151	-		RR42_RS15700	0.48	+0.4
3,393,158	+		RR42_RS15700	0.49	-2.2
3,393,159	-		RR42_RS15700	0.49	-2.3
3,393,254	+		RR42_RS15700	0.56	-0.5
3,393,254	+		RR42_RS15700	0.56	+0.1
3,393,254	+		RR42_RS15700	0.56	+0.5
3,393,276	+		RR42_RS15700	0.58	+0.0
3,393,327	+		RR42_RS15700	0.62	+0.1
3,393,334	-		RR42_RS15700	0.62	-1.5
3,393,518	+		RR42_RS15700	0.76	-2.0
3,393,632	+		RR42_RS15700	0.85	-0.8
3,393,632	+		RR42_RS15700	0.85	+1.1
3,393,632	+		RR42_RS15700	0.85	-3.2
3,393,633	-		RR42_RS15700	0.85	-1.9
3,393,635	+		RR42_RS15700	0.85	-1.2
3,393,696	-		RR42_RS15700	0.90	+0.8
3,393,696	-		RR42_RS15700	0.90	-0.1
3,393,734	+				+0.9
3,393,734	+				+0.0
3,393,735	-				+0.8
3,393,746	+				-0.1
3,393,747	-				+2.1
3,393,818	+				-0.7
3,393,873	+				+0.9
3,393,885	+				+0.3
3,393,885	+				+1.5
3,393,885	+				+1.1
3,393,885	+				-0.3
3,393,886	-				-0.5
3,394,005	-		RR42_RS15705	0.12	+0.6
3,394,200	+		RR42_RS15705	0.30	+0.6
3,394,200	+		RR42_RS15705	0.30	+0.8
3,394,200	+		RR42_RS15705	0.30	+0.5
3,394,200	+		RR42_RS15705	0.30	+0.3
3,394,201	-		RR42_RS15705	0.30	+0.4
3,394,942	+				+2.2
3,395,044	+				-2.2
3,395,122	-		RR42_RS15710	0.10	-0.3
3,395,278	-		RR42_RS15710	0.23	-1.7
3,395,426	+		RR42_RS15710	0.35	-0.7
3,395,427	-		RR42_RS15710	0.35	-1.0
3,395,569	-		RR42_RS15710	0.46	-1.4
3,395,582	-		RR42_RS15710	0.47	-1.7
3,395,766	+		RR42_RS15710	0.62	-1.7
3,395,766	+		RR42_RS15710	0.62	-0.9
3,395,811	+		RR42_RS15710	0.65	-0.3
3,395,811	+		RR42_RS15710	0.65	-3.4
3,395,812	-		RR42_RS15710	0.66	+0.5
3,395,891	-		RR42_RS15710	0.72	-1.5
3,395,943	+		RR42_RS15710	0.76	-0.9