Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15670

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,384,184	-				+0.2
3,384,184	-				-0.5
3,384,252	+		RR42_RS15665	0.23	-2.2
3,384,302	-		RR42_RS15665	0.39	-2.0
3,384,355	+		RR42_RS15665	0.55	+1.0
3,384,355	+		RR42_RS15665	0.55	+0.1
3,384,356	-		RR42_RS15665	0.56	-0.2
3,384,356	-		RR42_RS15665	0.56	+0.5
3,384,356	-		RR42_RS15665	0.56	-1.1
3,384,434	+		RR42_RS15665	0.80	+0.6
3,384,435	-		RR42_RS15665	0.80	+1.5
3,384,435	-		RR42_RS15665	0.80	+1.0
3,384,494	+				+0.3
3,384,495	-				+0.2
3,384,707	+				-0.9
3,384,708	-				-1.0
3,384,752	-				+0.1
3,384,870	-		RR42_RS15670	0.16	+1.5
3,384,936	+		RR42_RS15670	0.20	-0.4
3,384,936	+		RR42_RS15670	0.20	+0.1
3,384,937	-		RR42_RS15670	0.20	+0.7
3,384,937	-		RR42_RS15670	0.20	-0.9
3,384,937	-		RR42_RS15670	0.20	+0.3
3,384,992	-		RR42_RS15670	0.24	+1.4
3,384,992	-		RR42_RS15670	0.24	+0.7
3,384,992	-		RR42_RS15670	0.24	-0.0
3,384,992	-		RR42_RS15670	0.24	+0.4
3,385,060	-		RR42_RS15670	0.29	+1.9
3,385,078	+		RR42_RS15670	0.30	-0.9
3,385,112	-		RR42_RS15670	0.32	-0.2
3,385,223	-		RR42_RS15670	0.40	+0.5
3,385,223	-		RR42_RS15670	0.40	+0.0
3,385,427	-		RR42_RS15670	0.53	-2.0
3,385,454	-		RR42_RS15670	0.55	+0.1
3,385,562	-		RR42_RS15670	0.62	-0.3
3,385,728	-		RR42_RS15670	0.74	+0.6
3,386,005	+				-0.4
3,386,005	+				+1.3
3,386,322	+		RR42_RS15675	0.12	+0.8
3,386,457	+		RR42_RS15675	0.28	+0.8
3,386,457	+		RR42_RS15675	0.28	-0.5
3,386,457	+		RR42_RS15675	0.28	+0.4
3,386,457	+		RR42_RS15675	0.28	+0.1
3,386,737	-		RR42_RS15675	0.62	-0.4
3,386,746	+		RR42_RS15675	0.63	+2.4
3,387,044	+				+0.0