Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15595

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,368,464	+				+1.3
3,368,464	+				+0.5
3,368,465	-				+0.8
3,368,715	+				+0.1
3,368,808	+		RR42_RS15595	0.14	-2.2
3,368,808	+		RR42_RS15595	0.14	-1.4
3,368,809	-		RR42_RS15595	0.14	-0.3
3,368,809	-		RR42_RS15595	0.14	-0.6
3,368,809	-		RR42_RS15595	0.14	-2.5
3,368,992	-		RR42_RS15595	0.23	-1.9
3,369,473	+		RR42_RS15595	0.46	-0.8
3,369,504	+		RR42_RS15595	0.48	+0.8
3,369,504	+		RR42_RS15595	0.48	+1.7
3,369,505	-		RR42_RS15595	0.48	+1.1
3,369,577	-		RR42_RS15595	0.51	-1.6
3,369,719	-		RR42_RS15595	0.58	-0.2
3,369,771	+		RR42_RS15595	0.61	+0.6
3,369,771	+		RR42_RS15595	0.61	-0.9
3,369,772	-		RR42_RS15595	0.61	+0.3
3,369,879	+		RR42_RS15595	0.66	-1.1
3,370,122	+		RR42_RS15595	0.78	+0.1
3,370,123	-		RR42_RS15595	0.78	-1.3
3,370,240	-		RR42_RS15595	0.84	-0.2
3,370,240	-		RR42_RS15595	0.84	-1.5
3,370,240	-		RR42_RS15595	0.84	-1.2
3,370,257	+		RR42_RS15595	0.85	+0.4
3,370,257	+		RR42_RS15595	0.85	+0.4
3,370,258	-		RR42_RS15595	0.85	+1.7
3,370,258	-		RR42_RS15595	0.85	-0.1
3,370,258	-		RR42_RS15595	0.85	+0.1
3,370,258	-		RR42_RS15595	0.85	-1.2
3,370,259	+		RR42_RS15595	0.85	+0.4
3,370,260	-		RR42_RS15595	0.85	-0.5
3,370,260	-		RR42_RS15595	0.85	-0.1
3,370,509	+				+1.0
3,370,510	-				+0.0
3,370,742	+		RR42_RS15600	0.15	+0.4
3,370,775	+		RR42_RS15600	0.20	+0.2
3,370,775	+		RR42_RS15600	0.20	-0.3
3,370,776	-		RR42_RS15600	0.20	+1.1
3,370,776	-		RR42_RS15600	0.20	-1.6
3,370,806	-		RR42_RS15600	0.25	+0.1
3,370,806	-		RR42_RS15600	0.25	-1.0
3,370,845	-		RR42_RS15600	0.30	-1.1
3,371,079	-		RR42_RS15600	0.66	+0.0
3,371,272	-				+0.9
3,371,435	+				+1.0
3,371,436	-				-0.7
3,371,449	-				+0.9
3,371,451	+				-0.9
3,371,451	+				+0.6
3,371,451	+				-0.5
3,371,497	+				+0.8