Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15475

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,342,512	+		RR42_RS15465	0.81	-1.1
3,342,634	-				-0.8
3,342,715	-				+0.7
3,343,122	+		RR42_RS15470	0.84	-0.5
3,343,122	+		RR42_RS15470	0.84	-2.3
3,343,464	-		RR42_RS15475	0.34	-1.7
3,343,486	-		RR42_RS15475	0.37	-2.5
3,343,486	-		RR42_RS15475	0.37	-2.7
3,343,684	+		RR42_RS15475	0.66	-1.1
3,343,786	+		RR42_RS15475	0.81	-2.6
3,343,795	+		RR42_RS15475	0.82	+0.1
3,343,795	+		RR42_RS15475	0.82	-1.5
3,343,796	-		RR42_RS15475	0.82	-2.7
3,343,796	-		RR42_RS15475	0.82	-3.4
3,343,796	-		RR42_RS15475	0.82	-2.3
3,343,796	-		RR42_RS15475	0.82	-1.0
3,343,796	-		RR42_RS15475	0.82	-1.9
3,343,796	-		RR42_RS15475	0.82	-0.9
3,343,797	+		RR42_RS15475	0.83	-0.6
3,343,798	-		RR42_RS15475	0.83	+0.3
3,343,798	-		RR42_RS15475	0.83	-0.5
3,343,798	-		RR42_RS15475	0.83	-1.4
3,343,974	+		RR42_RS15480	0.15	-2.1
3,344,123	+		RR42_RS15480	0.52	-0.1
3,344,123	+		RR42_RS15480	0.52	+0.9
3,344,123	+		RR42_RS15480	0.52	+0.6
3,344,124	-		RR42_RS15480	0.52	+0.5
3,344,124	-		RR42_RS15480	0.52	+0.7
3,344,241	-		RR42_RS15480	0.81	+0.3
3,344,257	+		RR42_RS15480	0.85	+0.5
3,344,258	-		RR42_RS15480	0.85	-1.4
3,344,286	-				+0.3
3,344,329	-				+1.1
3,344,371	+				-1.9
3,344,371	+				+0.2
3,344,371	+				-0.9
3,344,372	-				-0.1
3,344,380	+				+1.0
3,344,380	+				-0.3
3,344,381	-				+0.5
3,344,381	-				+0.1
3,344,512	+				+0.4
3,344,608	+				-0.5