Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15450

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,337,773	+				+0.4
3,337,774	-				+0.5
3,337,774	-				+0.9
3,337,774	-				-0.5
3,337,797	-				-0.6
3,337,894	-				+0.5
3,337,991	-		RR42_RS15445	0.17	-1.6
3,337,991	-		RR42_RS15445	0.17	-0.1
3,337,991	-		RR42_RS15445	0.17	-1.0
3,337,992	+		RR42_RS15445	0.17	-1.9
3,337,993	-		RR42_RS15445	0.17	+2.4
3,337,993	-		RR42_RS15445	0.17	-3.6
3,337,993	-		RR42_RS15445	0.17	-0.5
3,338,013	+		RR42_RS15445	0.20	+0.7
3,338,151	+		RR42_RS15445	0.40	-0.5
3,338,151	+		RR42_RS15445	0.40	-1.2
3,338,151	+		RR42_RS15445	0.40	-1.3
3,338,152	-		RR42_RS15445	0.40	-0.7
3,338,152	-		RR42_RS15445	0.40	-1.2
3,338,181	+		RR42_RS15445	0.44	-1.6
3,338,264	-		RR42_RS15445	0.57	-1.7
3,338,281	-		RR42_RS15445	0.59	-2.6
3,338,284	+		RR42_RS15445	0.60	-2.1
3,338,634	+				-0.4
3,338,635	-				+0.7
3,338,659	-				-0.7
3,338,659	-				+1.1
3,338,663	+				+0.4
3,338,664	-				+0.4
3,338,664	-				+1.8
3,338,673	+				-1.5
3,338,673	+				+0.4
3,338,674	-				+2.7
3,338,674	-				-0.4
3,338,715	+				-0.5
3,338,715	+				-0.3
3,338,716	-				+0.4
3,338,769	+				+1.0
3,338,769	+				+0.6
3,338,778	-				-0.5
3,338,778	-				+0.4
3,338,880	+		RR42_RS15450	0.22	-0.2
3,338,881	-		RR42_RS15450	0.22	-1.0
3,338,922	+		RR42_RS15450	0.27	+0.1
3,338,976	+		RR42_RS15450	0.35	+1.3
3,338,977	-		RR42_RS15450	0.35	+2.1
3,339,069	+		RR42_RS15450	0.47	+0.7
3,339,070	-		RR42_RS15450	0.47	+0.9
3,339,166	-		RR42_RS15450	0.60	+0.7
3,339,439	+				-0.3
3,339,439	+				-4.1
3,339,439	+				-2.0
3,339,492	+				-1.7
3,339,493	-				+0.0
3,339,493	-				-2.0
3,339,493	-				-0.5
3,339,495	+				-1.4
3,339,495	+				-2.1
3,339,495	+				+0.4
3,339,496	-				-0.9
3,339,496	-				-0.8
3,339,496	-				+0.4
3,339,496	-				-1.4
3,339,663	+		RR42_RS15455	0.34	-1.2
3,339,762	+		RR42_RS15455	0.53	-3.6
3,339,780	+		RR42_RS15455	0.57	-0.8
3,339,781	-		RR42_RS15455	0.57	-1.0
3,339,781	-		RR42_RS15455	0.57	-1.7
3,339,781	-		RR42_RS15455	0.57	-2.3
3,339,781	-		RR42_RS15455	0.57	+2.2
3,339,781	-		RR42_RS15455	0.57	-2.2
3,339,798	+		RR42_RS15455	0.61	-0.7
3,339,799	-		RR42_RS15455	0.61	-2.2
3,339,892	+		RR42_RS15455	0.79	-0.5
3,339,997	+				-1.9
3,340,011	-				+0.4
3,340,026	-				+0.6
3,340,026	-				+0.1
3,340,319	+		RR42_RS15460	0.22	-0.9
3,340,418	+		RR42_RS15460	0.30	-0.9
3,340,418	+		RR42_RS15460	0.30	-3.3
3,340,418	+		RR42_RS15460	0.30	-0.9
3,340,419	+		RR42_RS15460	0.30	-1.7