Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15425

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,332,561	+		RR42_RS15415	0.69	-2.6
3,332,562	-		RR42_RS15415	0.69	-0.1
3,332,562	-		RR42_RS15415	0.69	+0.8
3,332,846	-		RR42_RS15420	0.33	-0.6
3,332,846	-		RR42_RS15420	0.33	-1.2
3,333,091	+		RR42_RS15420	0.82	+0.1
3,333,092	-		RR42_RS15420	0.82	-0.4
3,333,260	-				+0.9
3,333,288	+				+0.2
3,333,380	+				+0.1
3,333,380	+				-0.9
3,333,381	-				-0.1
3,333,549	+		RR42_RS15425	0.16	-0.1
3,333,620	+		RR42_RS15425	0.22	-0.5
3,333,621	-		RR42_RS15425	0.22	+1.1
3,333,659	+		RR42_RS15425	0.26	-1.0
3,334,142	+		RR42_RS15425	0.67	-0.0
3,334,143	-		RR42_RS15425	0.67	-0.0
3,334,143	-		RR42_RS15425	0.67	-0.4
3,334,355	-		RR42_RS15425	0.86	-1.2
3,334,619	+				-0.5
3,334,620	-				+0.1
3,334,841	+		RR42_RS15430	0.15	+0.6
3,334,978	+		RR42_RS15430	0.22	+0.1
3,335,013	+		RR42_RS15430	0.24	-0.2
3,335,013	+		RR42_RS15430	0.24	-2.2
3,335,013	+		RR42_RS15430	0.24	-0.3
3,335,236	+		RR42_RS15430	0.35	-1.0
3,335,237	-		RR42_RS15430	0.35	-0.7
3,335,258	+		RR42_RS15430	0.37	+0.5
3,335,258	+		RR42_RS15430	0.37	-0.2
3,335,259	-		RR42_RS15430	0.37	+1.1
3,335,259	-		RR42_RS15430	0.37	+0.6
3,335,259	-		RR42_RS15430	0.37	-1.1
3,335,295	+		RR42_RS15430	0.39	-1.2
3,335,355	+		RR42_RS15430	0.42	+0.2
3,335,355	+		RR42_RS15430	0.42	-0.8
3,335,355	+		RR42_RS15430	0.42	-0.8
3,335,355	+		RR42_RS15430	0.42	-0.1
3,335,355	+		RR42_RS15430	0.42	-0.3
3,335,356	-		RR42_RS15430	0.42	-1.5
3,335,356	-		RR42_RS15430	0.42	-1.9
3,335,356	-		RR42_RS15430	0.42	+0.1
3,335,356	-		RR42_RS15430	0.42	-0.4
3,335,356	-		RR42_RS15430	0.42	-0.1
3,335,356	-		RR42_RS15430	0.42	-0.0
3,335,376	-		RR42_RS15430	0.43	-0.4
3,335,376	-				+0.1
3,335,411	+		RR42_RS15430	0.45	-0.4
3,335,411	+		RR42_RS15430	0.45	-1.8
3,335,411	+		RR42_RS15430	0.45	+0.7
3,335,412	-		RR42_RS15430	0.45	-0.3