Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14495

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,118,546	+		RR42_RS14490	0.84	-0.2
3,118,564	+		RR42_RS14490	0.85	+2.0
3,118,564	+		RR42_RS14490	0.85	+1.2
3,118,564	+		RR42_RS14490	0.85	-1.0
3,118,564	+		RR42_RS14490	0.85	+0.4
3,118,564	+		RR42_RS14490	0.85	+0.2
3,118,564	+		RR42_RS14490	0.85	-0.1
3,118,565	-		RR42_RS14490	0.85	+0.4
3,118,565	-		RR42_RS14490	0.85	-0.1
3,118,565	-		RR42_RS14490	0.85	-2.3
3,118,565	-		RR42_RS14490	0.85	-0.6
3,118,565	-		RR42_RS14490	0.85	-1.1
3,118,610	-		RR42_RS14490	0.86	+0.5
3,118,921	+				+0.0
3,118,921	+				+1.1
3,118,924	+				-2.0
3,118,925	-				-0.4
3,119,143	-				+1.0
3,119,299	+				-0.4
3,119,299	+				-0.2
3,119,299	+				-0.4
3,119,299	+				+1.0
3,119,300	-				+0.6
3,119,300	-				-0.7
3,119,300	-				-3.5
3,119,300	-				-0.8
3,119,300	-				-0.2
3,119,300	-				-1.1
3,119,300	-				-1.3
3,119,300	-				-1.1
3,119,301	+				-1.6
3,119,301	+				+1.4
3,119,301	+				+0.4
3,119,301	+				-0.5
3,119,301	+				-0.2
3,119,301	+				+0.4
3,119,302	-				-0.2
3,119,302	-				+1.1
3,119,302	-				-0.4
3,119,302	-				+1.4
3,119,302	-				-0.4
3,119,302	-				-0.3
3,119,445	+				+0.4
3,119,446	-				-1.5
3,119,491	+				-0.2
3,119,491	+				+0.6
3,119,491	+				+0.0
3,119,497	-				-1.7
3,119,530	-				-3.0
3,119,816	-		RR42_RS14495	0.24	-1.6
3,119,816	-		RR42_RS14495	0.24	-1.5
3,119,965	+		RR42_RS14495	0.36	-4.0
3,119,971	+		RR42_RS14495	0.37	-1.3
3,119,971	+		RR42_RS14495	0.37	-1.9
3,119,972	-		RR42_RS14495	0.37	-1.6
3,119,972	-		RR42_RS14495	0.37	-1.1
3,120,022	+		RR42_RS14495	0.41	-0.6
3,120,022	+		RR42_RS14495	0.41	-0.9
3,120,023	-		RR42_RS14495	0.41	+1.6
3,120,359	-		RR42_RS14495	0.69	-1.4
3,120,359	-		RR42_RS14495	0.69	-1.0
3,120,439	+		RR42_RS14495	0.76	-3.3
3,120,440	-		RR42_RS14495	0.76	-2.0
3,120,447	-		RR42_RS14495	0.76	-2.3
3,120,482	-		RR42_RS14495	0.79	-2.4
3,120,502	+		RR42_RS14495	0.81	-1.8
3,120,731	-				-1.8
3,120,731	-				+0.0
3,120,960	+				+3.3
3,120,960	+				+1.0
3,121,058	-		RR42_RS14500	0.22	+0.0
3,121,058	-		RR42_RS14500	0.22	+1.0
3,121,058	-		RR42_RS14500	0.22	-0.1
3,121,059	+		RR42_RS14500	0.23	+1.3
3,121,059	+		RR42_RS14500	0.23	-1.2
3,121,060	-		RR42_RS14500	0.23	-0.1
3,121,060	-		RR42_RS14500	0.23	+0.4
3,121,090	-		RR42_RS14500	0.27	+0.8
3,121,176	+		RR42_RS14500	0.40	+0.6
3,121,185	+		RR42_RS14500	0.41	-1.0
3,121,185	+		RR42_RS14500	0.41	+2.0
3,121,186	-		RR42_RS14500	0.41	-1.1
3,121,591	+				+3.6
3,121,676	+				-1.5
3,121,677	-				+0.2
3,121,677	-				-2.3
3,121,682	+				-2.2
3,121,682	+				-0.4
3,121,683	-				+0.3
3,121,683	-				+0.4
3,121,683	-				+0.8