Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14045

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14035 and RR42_RS14040 overlap by 4 nucleotidesRR42_RS14040 and RR42_RS14045 are separated by 1 nucleotidesRR42_RS14045 and RR42_RS14050 are separated by 180 nucleotides RR42_RS14035: RR42_RS14035 - GTPase Era, at 3,021,331 to 3,022,266 _RS14035 RR42_RS14040: RR42_RS14040 - ribonuclease III, at 3,022,263 to 3,023,033 _RS14040 RR42_RS14045: RR42_RS14045 - membrane protein, at 3,023,035 to 3,023,391 _RS14045 RR42_RS14050: RR42_RS14050 - signal peptidase, at 3,023,572 to 3,024,471 _RS14050 Position (kb) 3023 3024Strain fitness (log2 ratio) -1 0 1at 3023.055 kb on - strandat 3023.059 kb on - strandat 3023.082 kb on - strand, within RR42_RS14045at 3023.082 kb on - strand, within RR42_RS14045at 3023.084 kb on - strand, within RR42_RS14045at 3023.179 kb on - strand, within RR42_RS14045at 3023.574 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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3,023,055 - +0.2
3,023,059 - +0.4
3,023,082 - RR42_RS14045 0.13 +0.3
3,023,082 - RR42_RS14045 0.13 -1.5
3,023,084 - RR42_RS14045 0.14 +0.0
3,023,179 - RR42_RS14045 0.40 -1.0
3,023,574 - -1.1

Or see this region's nucleotide sequence