Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13975

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,009,662	+		RR42_RS13970	0.51	+0.7
3,009,870	+		RR42_RS13970	0.68	-1.4
3,009,982	-		RR42_RS13970	0.77	-0.4
3,009,982	-		RR42_RS13970	0.77	+0.6
3,010,114	+		RR42_RS13970	0.88	+1.5
3,010,125	-		RR42_RS13970	0.89	-0.2
3,010,156	+				-0.3
3,010,156	+				+1.1
3,010,156	+				+0.8
3,010,156	+				+0.3
3,010,157	-				+0.1
3,010,157	-				+0.3
3,010,203	+				-0.6
3,010,204	-				-2.5
3,010,205	+				-1.2
3,010,206	-				-2.6
3,010,206	-				-1.0
3,010,206	-				+0.1
3,010,250	+				-0.7
3,010,399	+				-0.5
3,010,399	+				+0.8
3,010,435	+				-0.0
3,010,435	+				+1.3
3,010,436	-				+0.2
3,010,507	+				-0.1
3,010,508	-				+1.1
3,010,508	-				+3.5
3,010,508	-				-0.3
3,010,546	+				+1.0
3,010,547	-				-2.0
3,010,647	-				+0.5
3,011,095	+		RR42_RS13975	0.28	-0.7
3,011,131	+		RR42_RS13975	0.30	-0.0
3,011,132	-		RR42_RS13975	0.30	-0.1
3,011,435	+		RR42_RS13975	0.50	-0.9
3,011,435	+		RR42_RS13975	0.50	+0.5
3,011,455	+		RR42_RS13975	0.51	-1.6
3,011,535	+		RR42_RS13975	0.57	-0.2
3,011,535	+		RR42_RS13975	0.57	+0.5
3,011,535	+		RR42_RS13975	0.57	-0.8
3,011,535	+		RR42_RS13975	0.57	+0.1
3,011,535	+		RR42_RS13975	0.57	-0.6
3,011,535	+		RR42_RS13975	0.57	-1.9
3,011,536	-		RR42_RS13975	0.57	-2.0
3,011,536	-		RR42_RS13975	0.57	-1.0
3,011,536	-		RR42_RS13975	0.57	+0.6
3,011,536	-		RR42_RS13975	0.57	-1.9
3,011,536	-		RR42_RS13975	0.57	+0.3
3,011,629	+		RR42_RS13975	0.63	-0.1
3,011,629	+		RR42_RS13975	0.63	-2.2
3,011,655	-		RR42_RS13975	0.64	-0.4
3,011,662	-		RR42_RS13975	0.65	-1.8
3,011,662	-		RR42_RS13975	0.65	-0.0
3,011,772	-		RR42_RS13975	0.72	+0.7
3,011,772	-		RR42_RS13975	0.72	+1.6
3,011,917	-		RR42_RS13975	0.81	-0.2
3,011,954	-		RR42_RS13975	0.84	+0.0
3,012,006	+		RR42_RS13975	0.87	+0.3
3,012,007	-		RR42_RS13975	0.87	-0.9
3,012,007	-		RR42_RS13975	0.87	+0.2
3,012,012	+		RR42_RS13975	0.87	+0.5
3,012,012	+		RR42_RS13975	0.87	-2.0
3,012,012	+		RR42_RS13975	0.87	+0.8
3,012,013	-		RR42_RS13975	0.88	-0.8
3,012,031	+		RR42_RS13975	0.89	-0.3
3,012,031	+		RR42_RS13975	0.89	-0.3
3,012,031	+		RR42_RS13975	0.89	-2.0
3,012,093	+				-0.4
3,012,094	-				+0.3
3,012,098	-				-0.2
3,012,131	-				-1.0
3,012,183	-				-0.0
3,012,183	-				-1.9
3,012,249	+				-0.8
3,012,250	-				+0.3
3,012,250	-				-0.5
3,012,616	-				-0.2
3,012,641	-				-2.3
3,012,641	-				-1.5
3,012,641	-				-0.6
3,013,097	-				-0.9
3,013,203	-				-1.0