Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13935

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,003,818	+				-0.4
3,004,262	-				-0.2
3,004,281	+				+1.0
3,004,281	+				-0.3
3,004,282	-				-0.7
3,004,282	-				+0.2
3,004,282	-				-0.1
3,004,364	-				-0.0
3,004,631	+		RR42_RS13935	0.45	-2.4
3,004,631	+		RR42_RS13935	0.45	-2.5
3,004,631	+		RR42_RS13935	0.45	-0.8
3,004,632	-		RR42_RS13935	0.46	-2.4
3,004,632	-		RR42_RS13935	0.46	-1.4
3,004,786	+				-2.3
3,004,878	+				-0.2
3,004,878	+				+0.1
3,004,878	+				+0.4
3,004,878	+				+0.0
3,004,878	+				+0.6
3,004,878	+				-1.7
3,004,878	+				-1.6
3,004,878	+				+0.4
3,004,878	+				+0.2
3,004,878	+				-0.4
3,004,878	+				-2.0
3,004,878	+				+0.4
3,004,878	+				+0.2
3,004,878	+				+0.2
3,004,878	+				+0.8
3,004,879	-				-0.9
3,004,879	-				+0.7
3,004,879	-				-0.3
3,004,879	-				-1.7
3,004,879	-				+0.3
3,004,879	-				-0.8
3,004,879	-				-0.2
3,004,879	-				+0.4
3,004,912	-				+0.2
3,004,989	-				+1.4
3,005,058	-				-0.5
3,005,058	-				-3.7
3,005,058	-				+0.4
3,005,058	-				+1.0
3,005,080	-				-1.0
3,005,144	-		RR42_RS13940	0.21	-0.0
3,005,144	-		RR42_RS13940	0.21	+0.8
3,005,144	-		RR42_RS13940	0.21	-0.2
3,005,277	+		RR42_RS13940	0.53	+0.3
3,005,277	+		RR42_RS13940	0.53	-1.2
3,005,277	+		RR42_RS13940	0.53	-2.5
3,005,277	+		RR42_RS13940	0.53	-0.6
3,005,278	-		RR42_RS13940	0.54	-0.3
3,005,278	-		RR42_RS13940	0.54	-0.2
3,005,300	+		RR42_RS13940	0.59	-0.5
3,005,300	+		RR42_RS13940	0.59	-0.6
3,005,301	-		RR42_RS13940	0.59	+0.5
3,005,466	+				-0.1
3,005,466	+				-0.8
3,005,466	+				-1.9
3,005,466	+				+0.6
3,005,467	-				-0.2
3,005,467	-				-0.8
3,005,505	-				-0.5
3,005,505	-				-0.2
3,005,505	-				-0.4
3,005,505	-				-1.1
3,005,749	+		RR42_RS13945	0.33	+0.3
3,005,750	-		RR42_RS13945	0.33	-0.2
3,005,786	-		RR42_RS13945	0.47	-2.6