Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13370

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,882,435	+				+0.8
2,882,436	-				-0.0
2,882,436	-				-1.1
2,882,501	-		RR42_RS13365	0.19	+3.7
2,882,591	-		RR42_RS13365	0.32	+2.2
2,882,741	-		RR42_RS13365	0.54	+2.5
2,882,992	-				+3.6
2,882,992	-				+2.3
2,883,183	-				+0.4
2,883,183	-				+2.2
2,883,210	+				+3.7
2,883,210	+				+2.8
2,883,227	+				+3.0
2,883,228	-				-0.6
2,883,229	+				+1.8
2,883,229	+				+2.5
2,883,229	+				+2.3
2,883,229	+				+2.4
2,883,230	-				+0.9
2,883,230	-				-0.7
2,883,230	-				+1.3
2,883,295	-				-2.1
2,883,297	-				-2.2
2,883,440	+				+1.0
2,883,440	+				+0.2
2,883,441	-				+0.6
2,883,441	-				-1.7
2,883,579	-		RR42_RS13370	0.10	+0.4
2,884,063	-		RR42_RS13370	0.40	-1.3
2,884,158	-		RR42_RS13370	0.46	-0.9
2,884,199	-		RR42_RS13370	0.48	-1.0
2,884,256	+		RR42_RS13370	0.52	+0.2
2,884,256	+		RR42_RS13370	0.52	-1.4
2,884,417	+		RR42_RS13370	0.62	+1.5
2,884,418	-		RR42_RS13370	0.62	+1.2
2,884,811	+		RR42_RS13370	0.86	-0.8
2,885,171	+				-0.5
2,885,172	-				-2.3
2,885,229	+		RR42_RS13375	0.12	-0.3
2,885,230	-		RR42_RS13375	0.13	-1.4
2,885,230	-		RR42_RS13375	0.13	+0.2
2,885,232	+		RR42_RS13375	0.13	-1.8
2,885,233	-		RR42_RS13375	0.13	+1.3
2,885,480	-		RR42_RS13375	0.35	+0.1
2,885,480	-		RR42_RS13375	0.35	+0.9
2,885,500	+		RR42_RS13375	0.37	-1.1
2,885,611	+		RR42_RS13375	0.46	-0.7
2,885,611	+		RR42_RS13375	0.46	+0.6
2,885,768	-		RR42_RS13375	0.60	-1.4
2,885,768	-		RR42_RS13375	0.60	+0.9
2,885,875	+		RR42_RS13375	0.70	+0.5
2,885,936	+		RR42_RS13375	0.75	-1.6
2,885,996	-		RR42_RS13375	0.80	-0.7
2,885,996	-		RR42_RS13375	0.80	-0.6
2,885,996	-		RR42_RS13375	0.80	-1.1
2,886,016	+		RR42_RS13375	0.82	-1.2