Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12945

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,785,439	-				+0.2
2,786,394	-		RR42_RS12945	0.46	+0.2
2,786,605	-		RR42_RS12945	0.59	+1.1
2,786,709	-		RR42_RS12945	0.65	-0.5
2,786,709	-		RR42_RS12945	0.65	-0.3
2,786,886	+		RR42_RS12945	0.77	-0.6
2,787,024	-		RR42_RS12945	0.85	-1.5
2,787,024	-		RR42_RS12945	0.85	+0.3
2,787,033	+		RR42_RS12945	0.86	-0.3
2,787,120	+				-1.3
2,787,201	+				-0.7
2,787,202	-				-0.3
2,787,290	-				+0.5
2,787,386	+		RR42_RS12950	0.13	+1.0
2,787,387	-		RR42_RS12950	0.13	-0.4
2,787,388	+		RR42_RS12950	0.13	-0.7
2,787,388	+		RR42_RS12950	0.13	-0.9
2,787,720	-		RR42_RS12950	0.58	+0.5
2,787,721	+		RR42_RS12950	0.58	-0.4
2,787,721	+		RR42_RS12950	0.58	-1.6
2,787,722	-		RR42_RS12950	0.58	+3.5
2,787,722	-		RR42_RS12950	0.58	-0.4
2,788,012	+				-0.9
2,788,013	-				-0.7
2,788,131	+				+0.5
2,788,131	+				+0.0
2,788,131	+				+0.7
2,788,131	+				+0.1
2,788,131	+				+0.1
2,788,131	+				-0.5
2,788,132	-				+0.1
2,788,132	-				+0.4
2,788,132	-				+0.7
2,788,132	-				-0.2
2,788,132	-				-0.2
2,788,178	+		RR42_RS12955	0.13	+0.4
2,788,179	-		RR42_RS12955	0.13	+1.5
2,788,179	-		RR42_RS12955	0.13	+0.1
2,788,185	-		RR42_RS12955	0.13	+0.7