Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12135

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,602,303	-				+0.8
2,602,394	+				+1.4
2,602,394	+				+1.3
2,602,395	-				+0.5
2,602,395	-				-0.8
2,602,786	+		RR42_RS12130	0.61	-2.3
2,602,902	+		RR42_RS12130	0.80	+0.3
2,602,962	-		RR42_RS12130	0.89	+0.2
2,603,020	+				+0.5
2,603,065	-				-0.9
2,603,260	+				-2.9
2,603,260	+				-0.3
2,603,260	+				-0.2
2,603,290	+				+1.2
2,603,292	+				-0.2
2,603,344	-				-1.1
2,603,407	-				+0.7
2,603,407	-				+0.7
2,603,435	+				+0.7
2,603,435	+				+0.4
2,603,574	+		RR42_RS12135	0.13	-1.9
2,603,574	+		RR42_RS12135	0.13	+0.4
2,603,574	+		RR42_RS12135	0.13	+0.2
2,603,575	-		RR42_RS12135	0.13	-0.8
2,603,575	-		RR42_RS12135	0.13	-0.2
2,603,575	-		RR42_RS12135	0.13	+0.8
2,603,575	-		RR42_RS12135	0.13	-0.5
2,603,575	-		RR42_RS12135	0.13	-0.3
2,603,629	-		RR42_RS12135	0.16	+0.2
2,603,629	-		RR42_RS12135	0.16	-0.3
2,603,777	+		RR42_RS12135	0.23	-0.4
2,603,777	+		RR42_RS12135	0.23	-0.1
2,603,793	+		RR42_RS12135	0.23	-0.4
2,603,794	-		RR42_RS12135	0.23	-2.9
2,603,898	+		RR42_RS12135	0.28	-0.9
2,603,898	+		RR42_RS12135	0.28	-2.7
2,603,899	-		RR42_RS12135	0.28	+1.3
2,603,899	-		RR42_RS12135	0.28	-0.4
2,603,899	-		RR42_RS12135	0.28	+0.2
2,603,900	+		RR42_RS12135	0.28	-0.6
2,603,900	+		RR42_RS12135	0.28	-0.2
2,603,900	+		RR42_RS12135	0.28	-0.3
2,603,900	+		RR42_RS12135	0.28	+0.2
2,603,900	+		RR42_RS12135	0.28	-1.5
2,604,180	+		RR42_RS12135	0.41	+0.6
2,604,180	+		RR42_RS12135	0.41	+0.6
2,604,180	+		RR42_RS12135	0.41	+0.6
2,604,181	-		RR42_RS12135	0.41	+0.3
2,604,183	-		RR42_RS12135	0.41	+0.4
2,604,183	-		RR42_RS12135	0.41	-0.6
2,604,465	+		RR42_RS12135	0.54	+1.4
2,604,624	+		RR42_RS12135	0.61	+1.3
2,604,625	-		RR42_RS12135	0.61	-0.2
2,604,687	+		RR42_RS12135	0.64	+0.1
2,604,737	+		RR42_RS12135	0.67	+0.3
2,604,870	+		RR42_RS12135	0.73	+1.6
2,604,870	+		RR42_RS12135	0.73	-0.2
2,605,101	+		RR42_RS12135	0.83	+0.1
2,605,101	+		RR42_RS12135	0.83	+0.1
2,605,101	+		RR42_RS12135	0.83	-2.0
2,605,101	+		RR42_RS12135	0.83	+0.2
2,605,102	-		RR42_RS12135	0.83	+0.1
2,605,104	+		RR42_RS12135	0.83	-3.1
2,605,105	-		RR42_RS12135	0.83	+0.8
2,605,229	-		RR42_RS12135	0.89	-1.8
2,605,239	-		RR42_RS12135	0.90	-0.4
2,605,315	+				-1.3
2,605,316	-				+1.3
2,605,332	+				+0.1
2,605,332	+				+1.8
2,605,332	+				+0.1
2,605,333	-				+0.8
2,605,410	+				-0.7
2,605,411	-				+0.3
2,605,568	-				-0.6
2,605,660	+				+0.4
2,605,782	+				-0.0
2,605,783	-				+0.0
2,605,840	-		RR42_RS12140	0.13	+0.4
2,605,867	-		RR42_RS12140	0.16	+1.3
2,606,102	-		RR42_RS12140	0.38	+0.5
2,606,205	+		RR42_RS12140	0.48	-1.6
2,606,210	-		RR42_RS12140	0.49	+0.2
2,606,210	-		RR42_RS12140	0.49	+2.4
2,606,298	+		RR42_RS12140	0.57	-0.3
2,606,299	-		RR42_RS12140	0.57	+1.6
2,606,385	+		RR42_RS12140	0.65	-0.8
2,606,386	-		RR42_RS12140	0.65	+1.1
2,606,386	-		RR42_RS12140	0.65	-0.8
2,606,394	+		RR42_RS12140	0.66	+0.3
2,606,395	-		RR42_RS12140	0.66	-0.2
2,606,395	-		RR42_RS12140	0.66	+0.5
2,606,440	-		RR42_RS12140	0.71	-0.5
2,606,440	-		RR42_RS12140	0.71	+0.1