Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11755

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,514,868	-				-0.1
2,514,921	+				-0.4
2,514,948	-				-0.4
2,514,948	-				-2.0
2,514,966	-				-1.5
2,514,973	+				+1.5
2,514,974	-				+0.3
2,515,030	+				-1.2
2,515,030	+				-0.8
2,515,030	+				-0.3
2,515,031	-				-0.8
2,515,031	-				-0.9
2,515,031	-				-2.4
2,515,031	-				-1.6
2,515,031	-				-1.5
2,515,031	-				-0.2
2,515,194	+		RR42_RS11755	0.24	-1.1
2,515,195	-		RR42_RS11755	0.24	-2.4
2,515,197	+		RR42_RS11755	0.24	-1.3
2,515,197	+		RR42_RS11755	0.24	-0.6
2,515,197	+		RR42_RS11755	0.24	+0.8
2,515,197	+		RR42_RS11755	0.24	+0.2
2,515,197	+		RR42_RS11755	0.24	-1.2
2,515,198	-		RR42_RS11755	0.25	-1.4
2,515,198	-		RR42_RS11755	0.25	-0.3
2,515,198	-		RR42_RS11755	0.25	-0.1
2,515,198	-		RR42_RS11755	0.25	-0.6
2,515,198	-		RR42_RS11755	0.25	+0.3
2,515,370	+		RR42_RS11755	0.42	-2.0
2,515,370	+		RR42_RS11755	0.42	-0.9
2,515,370	+		RR42_RS11755	0.42	-1.4
2,515,371	-		RR42_RS11755	0.42	+0.6
2,515,494	+		RR42_RS11755	0.55	-0.8
2,515,495	-		RR42_RS11755	0.55	-0.8
2,515,515	+		RR42_RS11755	0.57	-0.0
2,515,515	+		RR42_RS11755	0.57	-0.2
2,515,515	+		RR42_RS11755	0.57	+0.7
2,515,563	+		RR42_RS11755	0.62	+0.3
2,515,563	+		RR42_RS11755	0.62	-0.3
2,515,563	+		RR42_RS11755	0.62	-0.9
2,515,563	+		RR42_RS11755	0.62	-0.1
2,515,740	-		RR42_RS11755	0.80	+0.2
2,515,786	+		RR42_RS11755	0.85	+0.6
2,515,786	+		RR42_RS11755	0.85	+1.6
2,515,787	-		RR42_RS11755	0.85	-1.2
2,515,927	-				-0.4
2,516,041	+				-1.6
2,516,042	-				+0.2
2,516,171	-		RR42_RS11760	0.21	+0.5
2,516,171	-		RR42_RS11760	0.21	-0.6
2,516,171	-		RR42_RS11760	0.21	-0.2
2,516,171	-		RR42_RS11760	0.21	-0.4
2,516,494	+		RR42_RS11760	0.77	-0.2
2,516,494	+		RR42_RS11760	0.77	+0.3
2,516,495	-		RR42_RS11760	0.77	-0.6
2,516,495	-		RR42_RS11760	0.77	-0.1
2,516,495	-		RR42_RS11760	0.77	-0.6
2,516,761	+		RR42_RS11765	0.30	+0.6