Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11540

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,466,715	+		RR42_RS11535	0.56	+0.9
2,466,715	+		RR42_RS11535	0.56	+0.1
2,466,715	+		RR42_RS11535	0.56	+0.5
2,466,716	-		RR42_RS11535	0.57	+0.0
2,466,716	-		RR42_RS11535	0.57	-0.8
2,466,716	-		RR42_RS11535	0.57	-0.1
2,466,730	+		RR42_RS11535	0.58	-0.4
2,466,818	-		RR42_RS11535	0.64	-0.8
2,466,818	-		RR42_RS11535	0.64	-0.1
2,466,904	+		RR42_RS11535	0.70	-0.6
2,467,004	+		RR42_RS11535	0.78	-0.9
2,467,311	+				-1.2
2,467,312	-				-0.0
2,467,312	-				+0.6
2,467,344	-				+0.2
2,467,387	-				+0.3
2,467,673	-				-0.1
2,467,722	+				+1.1
2,467,723	-				+0.1
2,467,723	-				+0.3
2,467,857	+		RR42_RS11540	0.14	+0.3
2,467,907	+		RR42_RS11540	0.16	+2.9
2,467,908	-		RR42_RS11540	0.16	-2.2
2,467,912	-		RR42_RS11540	0.16	-0.0
2,468,106	+		RR42_RS11540	0.24	-0.1
2,468,106	+		RR42_RS11540	0.24	-0.7
2,468,106	+		RR42_RS11540	0.24	+3.4
2,468,400	+		RR42_RS11540	0.36	-0.3
2,468,401	-		RR42_RS11540	0.36	-0.8
2,468,401	-		RR42_RS11540	0.36	+0.6
2,468,402	+		RR42_RS11540	0.37	+0.8
2,468,402	+		RR42_RS11540	0.37	+0.9
2,468,402	+		RR42_RS11540	0.37	-1.1
2,468,402	+		RR42_RS11540	0.37	+0.1
2,468,403	-		RR42_RS11540	0.37	+1.1
2,468,403	-		RR42_RS11540	0.37	+0.4
2,468,407	-		RR42_RS11540	0.37	-1.0
2,468,497	-		RR42_RS11540	0.40	+0.5
2,468,497	-		RR42_RS11540	0.40	+0.9
2,468,547	+		RR42_RS11540	0.43	+0.2
2,468,548	-		RR42_RS11540	0.43	+0.8
2,468,619	+		RR42_RS11540	0.46	-1.1
2,468,781	+		RR42_RS11540	0.52	+0.7
2,468,782	-		RR42_RS11540	0.52	+0.4
2,468,782	-		RR42_RS11540	0.52	+1.3
2,468,782	-		RR42_RS11540	0.52	+0.1
2,468,782	-		RR42_RS11540	0.52	-2.7
2,468,802	-		RR42_RS11540	0.53	-0.3
2,468,889	+		RR42_RS11540	0.57	+0.2
2,468,890	-		RR42_RS11540	0.57	+0.9
2,468,969	+		RR42_RS11540	0.60	-1.1
2,468,969	+		RR42_RS11540	0.60	+0.1
2,468,970	-		RR42_RS11540	0.60	+0.8
2,468,970	-		RR42_RS11540	0.60	+0.3
2,468,970	-		RR42_RS11540	0.60	-0.7
2,469,088	-		RR42_RS11540	0.65	-0.9
2,469,183	+		RR42_RS11540	0.69	+0.5
2,469,210	+		RR42_RS11540	0.70	+0.1
2,469,210	+		RR42_RS11540	0.70	-1.1
2,469,210	+		RR42_RS11540	0.70	+0.1
2,469,211	-		RR42_RS11540	0.70	+0.2
2,469,211	-		RR42_RS11540	0.70	+0.1
2,469,268	-		RR42_RS11540	0.73	-2.7
2,469,268	-		RR42_RS11540	0.73	-0.2
2,469,328	-		RR42_RS11540	0.75	+0.3
2,469,414	+		RR42_RS11540	0.79	+0.8
2,469,415	-		RR42_RS11540	0.79	-1.0
2,469,415	-		RR42_RS11540	0.79	-0.4
2,469,420	+		RR42_RS11540	0.79	+0.4
2,469,435	+		RR42_RS11540	0.80	-0.6
2,469,435	+		RR42_RS11540	0.80	-0.3
2,469,435	+		RR42_RS11540	0.80	-0.9
2,469,435	+		RR42_RS11540	0.80	+0.7
2,469,435	+		RR42_RS11540	0.80	-0.3
2,469,435	+		RR42_RS11540	0.80	+0.2
2,469,658	-		RR42_RS11540	0.89	+0.5
2,469,735	+				+0.4
2,469,736	-				-0.7
2,469,777	+				-0.1
2,469,778	-				+0.8
2,469,778	-				+0.2
2,469,791	+				-1.2
2,469,791	+				-0.9
2,469,916	-				+1.7
2,469,988	+				+0.4
2,469,988	+				-0.2
2,469,988	+				+0.8
2,469,989	-				+0.8