Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11360

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,431,255	+		RR42_RS11355	0.45	-1.4
2,431,256	-		RR42_RS11355	0.45	+2.4
2,431,386	-		RR42_RS11355	0.55	-0.3
2,431,531	-		RR42_RS11355	0.66	+0.0
2,431,600	+		RR42_RS11355	0.71	-1.1
2,431,600	+		RR42_RS11355	0.71	+1.3
2,431,601	-		RR42_RS11355	0.71	-0.9
2,431,601	-		RR42_RS11355	0.71	+0.1
2,431,918	+				-0.8
2,431,919	-				+0.9
2,431,963	+				+0.1
2,431,963	+				-0.0
2,431,963	+				-0.8
2,431,963	+				+1.5
2,431,964	-				-1.3
2,431,964	-				+0.4
2,431,964	-				+2.3
2,432,307	-		RR42_RS11360	0.15	-0.3
2,432,351	+		RR42_RS11360	0.18	-0.9
2,432,351	+		RR42_RS11360	0.18	-0.3
2,432,368	+		RR42_RS11360	0.19	+0.3
2,432,442	-		RR42_RS11360	0.24	-2.3
2,432,442	-		RR42_RS11360	0.24	-0.5
2,432,456	-		RR42_RS11360	0.25	-1.8
2,432,456	-		RR42_RS11360	0.25	-0.0
2,432,645	+		RR42_RS11360	0.38	-0.1
2,432,645	+		RR42_RS11360	0.38	-0.7
2,432,662	+		RR42_RS11360	0.40	-0.7
2,432,663	-		RR42_RS11360	0.40	+1.4
2,433,290	+		RR42_RS11360	0.84	-0.0
2,433,291	-		RR42_RS11360	0.84	+0.4
2,433,458	+				-0.1
2,433,458	+				+0.8
2,433,459	-				+0.3
2,433,459	-				-1.7
2,433,500	+				-0.1
2,433,501	-				-0.6
2,433,533	+				-1.3
2,433,534	-				+0.2
2,433,534	-				+0.8
2,433,537	+				-2.7
2,433,537	+				-0.8
2,433,538	-				-0.1
2,433,538	-				+0.1
2,433,604	+				-0.5
2,433,604	+				-0.6
2,433,605	-				-0.2
2,433,605	-				-0.1
2,433,640	-				+1.0
2,433,694	-				-0.6
2,434,096	-		RR42_RS11365	0.46	-0.1
2,434,096	-		RR42_RS11365	0.46	-0.2
2,434,149	+		RR42_RS11365	0.51	+0.3
2,434,149	+		RR42_RS11365	0.51	+0.4
2,434,149	+		RR42_RS11365	0.51	-0.2
2,434,149	+		RR42_RS11365	0.51	+0.3
2,434,150	-		RR42_RS11365	0.51	-1.6
2,434,150	-		RR42_RS11365	0.51	+0.2
2,434,307	+		RR42_RS11365	0.69	-0.8
2,434,308	-		RR42_RS11365	0.69	+1.1
2,434,308	-		RR42_RS11365	0.69	+0.5