Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11155

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,381,617	-		RR42_RS11150	0.31	-0.7
2,381,625	+		RR42_RS11150	0.32	-1.0
2,381,625	+		RR42_RS11150	0.32	+0.2
2,381,625	+		RR42_RS11150	0.32	+0.2
2,381,625	+		RR42_RS11150	0.32	-0.3
2,381,626	-		RR42_RS11150	0.32	-1.0
2,381,626	-		RR42_RS11150	0.32	+0.4
2,381,626	-		RR42_RS11150	0.32	-1.4
2,381,626	-		RR42_RS11150	0.32	-0.7
2,381,685	+		RR42_RS11150	0.37	-2.0
2,381,688	+		RR42_RS11150	0.37	-0.5
2,381,688	+		RR42_RS11150	0.37	-1.7
2,381,688	+		RR42_RS11150	0.37	-1.1
2,381,689	-		RR42_RS11150	0.37	-0.4
2,381,689	-		RR42_RS11150	0.37	+1.1
2,381,695	-		RR42_RS11150	0.38	+0.6
2,381,695	-		RR42_RS11150	0.38	+0.8
2,381,695	-		RR42_RS11150	0.38	-0.9
2,381,697	+		RR42_RS11150	0.38	+0.3
2,381,698	-		RR42_RS11150	0.38	+1.2
2,381,698	-		RR42_RS11150	0.38	-0.3
2,381,698	-		RR42_RS11150	0.38	-0.7
2,381,698	-		RR42_RS11150	0.38	-0.6
2,381,929	-		RR42_RS11150	0.57	-1.2
2,381,946	+		RR42_RS11150	0.58	+1.1
2,381,979	+		RR42_RS11150	0.61	+0.5
2,381,980	-		RR42_RS11150	0.61	+0.8
2,381,980	-		RR42_RS11150	0.61	+1.3
2,382,078	+		RR42_RS11150	0.69	+0.3
2,382,087	+		RR42_RS11150	0.69	+0.1
2,382,374	-				+0.2
2,382,485	+				+0.6
2,382,486	-				+1.0
2,382,754	+				-0.6
2,382,755	-				+0.2
2,382,755	-				-0.8
2,382,839	-		RR42_RS11155	0.14	+0.1
2,382,839	-		RR42_RS11155	0.14	-0.1
2,382,839	-		RR42_RS11155	0.14	+0.4
2,382,839	-		RR42_RS11155	0.14	+0.4
2,382,861	-		RR42_RS11155	0.15	-0.3
2,382,861	-		RR42_RS11155	0.15	-0.8
2,382,964	+		RR42_RS11155	0.21	+0.0
2,382,964	+		RR42_RS11155	0.21	-0.8
2,382,965	-		RR42_RS11155	0.22	-0.3
2,382,965	-		RR42_RS11155	0.22	+0.5
2,383,042	+		RR42_RS11155	0.26	+1.8
2,383,147	+		RR42_RS11155	0.33	-2.2
2,383,147	+		RR42_RS11155	0.33	-0.0
2,383,148	-		RR42_RS11155	0.33	+0.5
2,383,148	-		RR42_RS11155	0.33	+0.3
2,383,148	-		RR42_RS11155	0.33	-1.1
2,383,148	-		RR42_RS11155	0.33	-0.1
2,383,377	+		RR42_RS11155	0.47	+0.6
2,383,377	+		RR42_RS11155	0.47	-0.1
2,383,377	+		RR42_RS11155	0.47	-1.0
2,383,401	+		RR42_RS11155	0.48	-0.6
2,383,615	+		RR42_RS11155	0.62	+0.6
2,383,616	-		RR42_RS11155	0.62	+1.0
2,383,646	-		RR42_RS11155	0.63	-0.8
2,383,646	-		RR42_RS11155	0.63	+0.2
2,383,647	+		RR42_RS11155	0.63	+0.9
2,383,648	-		RR42_RS11155	0.64	+2.2
2,383,648	-		RR42_RS11155	0.64	+0.4
2,383,684	+		RR42_RS11155	0.66	+0.4
2,383,684	+		RR42_RS11155	0.66	-0.0
2,383,685	-		RR42_RS11155	0.66	-0.8
2,383,729	+		RR42_RS11155	0.69	-0.0
2,383,729	+		RR42_RS11155	0.69	+0.4
2,383,729	+		RR42_RS11155	0.69	-0.1
2,383,730	-		RR42_RS11155	0.69	-0.9
2,383,894	+		RR42_RS11155	0.79	+0.6
2,383,894	+		RR42_RS11155	0.79	+0.1
2,383,895	-		RR42_RS11155	0.79	+0.3
2,383,895	-		RR42_RS11155	0.79	+0.4
2,383,895	-		RR42_RS11155	0.79	-0.8
2,383,966	-		RR42_RS11155	0.83	+0.0
2,383,990	+		RR42_RS11155	0.85	+0.2
2,383,993	+		RR42_RS11155	0.85	-1.2
2,383,993	+		RR42_RS11155	0.85	+0.8
2,383,993	+		RR42_RS11155	0.85	-0.1
2,383,993	+		RR42_RS11155	0.85	+0.2
2,383,994	-		RR42_RS11155	0.85	-0.6
2,383,994	-		RR42_RS11155	0.85	-0.5
2,384,114	+				-0.4
2,384,114	+				-0.2
2,384,114	+				+0.3
2,384,114	+				-0.5
2,384,114	+				-0.8
2,384,115	-				-1.4
2,384,117	-				+0.5
2,384,168	-				+0.4
2,384,245	+				-0.3
2,384,246	-				+0.5
2,384,482	-				+0.0
2,384,482	-				+0.2
2,384,486	+				-1.1
2,384,486	+				-1.6
2,384,487	-				+0.3
2,384,586	+				+0.3
2,384,587	-				-0.2
2,384,733	+				-0.1
2,384,733	+				-0.1
2,384,835	+		RR42_RS11160	0.11	+0.9
2,384,836	-		RR42_RS11160	0.11	+0.8
2,385,025	+		RR42_RS11160	0.24	+0.3
2,385,026	-		RR42_RS11160	0.24	+0.3
2,385,076	+		RR42_RS11160	0.27	-0.3
2,385,076	+		RR42_RS11160	0.27	+0.0
2,385,076	+		RR42_RS11160	0.27	-0.2
2,385,076	+		RR42_RS11160	0.27	+0.2
2,385,076	+		RR42_RS11160	0.27	+2.3
2,385,076	+		RR42_RS11160	0.27	+0.8
2,385,077	-		RR42_RS11160	0.27	-0.1
2,385,077	-		RR42_RS11160	0.27	+0.6