Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10995

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,347,187	+		RR42_RS10985	0.87	-0.1
2,347,188	-		RR42_RS10985	0.87	+0.4
2,347,281	+				-0.4
2,347,282	-				+0.3
2,347,283	+				-0.6
2,347,283	+				-0.4
2,347,283	+				+0.8
2,347,283	+				+0.2
2,347,284	-				-0.9
2,347,300	+				-1.5
2,347,418	+				+0.8
2,347,418	+				+0.9
2,347,418	+				+0.6
2,347,419	-				-0.8
2,347,490	+		RR42_RS10990	0.22	+0.3
2,347,491	-		RR42_RS10990	0.22	-0.1
2,347,491	-		RR42_RS10990	0.22	-0.1
2,347,491	-		RR42_RS10990	0.22	+0.0
2,347,529	+		RR42_RS10990	0.31	-0.2
2,347,529	+		RR42_RS10990	0.31	+0.2
2,347,530	-		RR42_RS10990	0.31	-0.4
2,347,709	+		RR42_RS10990	0.72	+1.3
2,347,725	+		RR42_RS10990	0.76	+0.9
2,347,726	-		RR42_RS10990	0.76	+0.7
2,347,923	+				+2.2
2,347,924	-				-0.2
2,347,932	+				-0.1
2,347,944	-				+0.2
2,347,944	-				-0.5
2,347,944	-				-0.5
2,348,018	+				-0.8
2,348,018	+				-0.5
2,348,019	-				+0.2
2,348,035	-				+1.0
2,348,036	+				-0.5
2,348,037	-				+1.3
2,348,037	-				+0.4
2,348,075	+		RR42_RS10995	0.13	+1.8
2,348,075	+		RR42_RS10995	0.13	-2.7
2,348,279	+		RR42_RS10995	0.34	+1.2
2,348,279	+		RR42_RS10995	0.34	-0.4
2,348,280	-		RR42_RS10995	0.34	+1.1
2,348,360	+		RR42_RS10995	0.42	+0.4
2,348,447	+		RR42_RS10995	0.51	-0.5
2,348,447	+		RR42_RS10995	0.51	+0.2
2,348,486	+		RR42_RS10995	0.55	+0.2
2,348,486	+		RR42_RS10995	0.55	-0.6
2,348,486	+		RR42_RS10995	0.55	-0.0
2,348,487	-		RR42_RS10995	0.55	-0.4
2,348,487	-		RR42_RS10995	0.55	-0.1
2,348,487	-		RR42_RS10995	0.55	+1.0
2,348,487	-		RR42_RS10995	0.55	+1.5
2,348,487	-		RR42_RS10995	0.55	-0.3
2,348,487	-		RR42_RS10995	0.55	-0.4
2,348,487	-		RR42_RS10995	0.55	+0.4
2,348,487	-		RR42_RS10995	0.55	+0.0
2,348,561	+		RR42_RS10995	0.63	+0.7
2,348,562	-		RR42_RS10995	0.63	-1.6
2,348,604	-		RR42_RS10995	0.67	-2.0
2,348,646	-		RR42_RS10995	0.71	+0.0
2,348,955	+				-0.4
2,348,955	+				-1.5
2,348,955	+				-0.2
2,348,955	+				+0.2
2,348,955	+				-0.2
2,348,955	+				+1.1
2,348,956	-				-0.4
2,348,956	-				-0.8
2,348,961	+				-0.2
2,348,961	+				-2.6
2,348,961	+				-0.4
2,348,961	+				-0.0
2,348,961	+				+0.2
2,348,961	+				-0.5
2,348,961	+				-3.2
2,348,962	-				-0.2
2,348,962	-				-0.7
2,348,969	+				+1.2
2,348,975	+				-0.8
2,348,976	-				+0.7
2,349,151	+		RR42_RS11000	0.11	+0.7
2,349,152	-		RR42_RS11000	0.11	+0.2
2,349,152	-		RR42_RS11000	0.11	-0.2
2,349,230	-		RR42_RS11000	0.19	-0.5
2,349,341	-		RR42_RS11000	0.31	+1.2
2,349,341	-		RR42_RS11000	0.31	+0.1
2,349,382	+		RR42_RS11000	0.35	+0.5
2,349,439	+		RR42_RS11000	0.41	-1.9
2,349,439	+		RR42_RS11000	0.41	-1.8
2,349,439	+		RR42_RS11000	0.41	-0.6
2,349,440	-		RR42_RS11000	0.41	-0.1
2,349,440	-		RR42_RS11000	0.41	-0.2
2,349,440	-		RR42_RS11000	0.41	-1.1
2,349,440	-		RR42_RS11000	0.41	+0.2
2,349,646	+		RR42_RS11000	0.62	-0.2
2,349,749	-		RR42_RS11000	0.73	-0.9
2,349,796	+		RR42_RS11000	0.78	+0.7
2,349,797	-		RR42_RS11000	0.78	+0.9