Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10885

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,328,513	-		RR42_RS10875	0.80	+0.5
2,328,618	+		RR42_RS10875	0.88	+0.3
2,328,618	+		RR42_RS10875	0.88	+0.4
2,328,619	-		RR42_RS10875	0.88	+0.1
2,328,700	-				+0.2
2,328,715	-				+0.1
2,328,817	+				+0.2
2,328,817	+				+0.4
2,328,817	+				-0.8
2,328,817	+				+0.3
2,328,817	+				-1.5
2,328,817	+				+1.2
2,328,818	-				+1.1
2,328,871	-				-0.3
2,328,871	-				-0.6
2,328,871	-				+0.7
2,329,072	+		RR42_RS10880	0.36	-0.0
2,329,073	-		RR42_RS10880	0.37	+0.5
2,329,073	-		RR42_RS10880	0.37	+0.9
2,329,073	-		RR42_RS10880	0.37	-0.8
2,329,074	+		RR42_RS10880	0.37	+0.9
2,329,074	+		RR42_RS10880	0.37	+0.6
2,329,075	-		RR42_RS10880	0.37	-0.7
2,329,075	-		RR42_RS10880	0.37	+0.4
2,329,075	-		RR42_RS10880	0.37	-0.6
2,329,432	+		RR42_RS10880	0.89	-0.3
2,329,536	-				+0.3
2,329,568	+				+0.3
2,329,681	+		RR42_RS10885	0.21	-0.3
2,329,682	-		RR42_RS10885	0.21	-1.0
2,329,784	+		RR42_RS10885	0.34	-1.2
2,329,785	-		RR42_RS10885	0.34	-2.6
2,329,785	-		RR42_RS10885	0.34	-0.1
2,329,785	-		RR42_RS10885	0.34	-2.0
2,329,956	-		RR42_RS10885	0.56	+1.0
2,330,110	+		RR42_RS10885	0.75	-0.9
2,330,111	-		RR42_RS10885	0.75	-0.9
2,330,138	-		RR42_RS10885	0.79	-0.3
2,330,244	+				-0.3
2,330,244	+				+0.5
2,330,245	-				-0.2
2,330,280	+				+0.8
2,330,281	-				-1.1
2,330,281	-				-2.1
2,330,596	+		RR42_RS10890	0.31	+0.3
2,330,596	+		RR42_RS10890	0.31	-1.1
2,330,596	+		RR42_RS10890	0.31	-0.4
2,330,596	+		RR42_RS10890	0.31	+0.9
2,330,596	+		RR42_RS10890	0.31	+1.6
2,330,597	-		RR42_RS10890	0.31	-0.3
2,330,597	-		RR42_RS10890	0.31	+0.4
2,330,643	+		RR42_RS10890	0.40	-0.6
2,330,643	+		RR42_RS10890	0.40	-0.3
2,330,643	+		RR42_RS10890	0.40	-0.5
2,330,643	+		RR42_RS10890	0.40	+0.0
2,330,643	+		RR42_RS10890	0.40	+0.6
2,330,644	-		RR42_RS10890	0.40	+0.1
2,330,682	+		RR42_RS10890	0.47	+0.5
2,330,682	+		RR42_RS10890	0.47	-0.5
2,330,889	+		RR42_RS10890	0.87	-0.3
2,330,889	+		RR42_RS10890	0.87	+0.6
2,330,890	-		RR42_RS10890	0.87	-0.3
2,330,890	-		RR42_RS10890	0.87	+0.2
2,330,890	-		RR42_RS10890	0.87	+0.2
2,330,890	-		RR42_RS10890	0.87	-0.1
2,330,938	+				+0.7
2,331,014	-				-0.9
2,331,017	+				-1.1
2,331,017	+				-0.0
2,331,018	-				+0.5
2,331,018	-				-0.4
2,331,208	+		RR42_RS10895	0.44	+0.1
2,331,208	+		RR42_RS10895	0.44	+0.3
2,331,209	-		RR42_RS10895	0.44	-0.1