Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10850

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,318,835	+		RR42_RS10840	0.23	-1.2
2,318,835	+		RR42_RS10840	0.23	+0.1
2,318,836	-		RR42_RS10840	0.23	+0.3
2,318,843	+		RR42_RS10840	0.24	+0.9
2,318,843	+		RR42_RS10840	0.24	-0.7
2,318,844	-		RR42_RS10840	0.24	+0.3
2,318,844	-		RR42_RS10840	0.24	-2.6
2,318,846	+		RR42_RS10840	0.25	-2.4
2,318,847	-		RR42_RS10840	0.25	-0.8
2,318,913	-		RR42_RS10840	0.36	-0.3
2,318,913	-		RR42_RS10840	0.36	+1.2
2,318,913	-		RR42_RS10840	0.36	-2.7
2,318,987	+		RR42_RS10840	0.48	-0.6
2,318,987	+		RR42_RS10840	0.48	-1.0
2,318,987	+		RR42_RS10840	0.48	+1.0
2,318,987	+		RR42_RS10840	0.48	+0.7
2,318,987	+		RR42_RS10840	0.48	+0.3
2,318,988	-		RR42_RS10840	0.49	+1.2
2,319,290	+				+0.8
2,319,356	+		RR42_RS10845	0.14	-0.7
2,319,415	+		RR42_RS10845	0.32	+0.7
2,319,415	+		RR42_RS10845	0.32	-0.2
2,319,416	-		RR42_RS10845	0.32	-0.0
2,319,416	-		RR42_RS10845	0.32	-0.7
2,319,821	+				-0.0
2,319,821	+				+0.2
2,319,821	+				+0.1
2,319,822	-				-0.1
2,319,873	+				+0.1
2,319,899	+				+0.3
2,319,901	+				+0.1
2,319,901	+				+0.7
2,319,901	+				+0.6
2,319,901	+				+1.1
2,319,902	-				-0.3
2,319,902	-				+0.1
2,319,902	-				-0.8
2,319,902	-				-2.1
2,320,364	-		RR42_RS10850	0.18	+0.2
2,320,610	+		RR42_RS10850	0.25	+0.3
2,320,610	+		RR42_RS10850	0.25	-0.4
2,320,611	-		RR42_RS10850	0.25	+0.7
2,320,611	-		RR42_RS10850	0.25	+0.4
2,320,611	-		RR42_RS10850	0.25	-1.4
2,320,676	+		RR42_RS10850	0.26	+0.5
2,320,676	+		RR42_RS10850	0.26	+0.1
2,321,192	+		RR42_RS10850	0.41	-0.3
2,321,192	+		RR42_RS10850	0.41	+1.3
2,321,203	-		RR42_RS10850	0.41	-1.1
2,321,414	-		RR42_RS10850	0.47	-1.4
2,321,439	+		RR42_RS10850	0.47	+0.4
2,321,551	+		RR42_RS10850	0.51	+0.3
2,321,552	-		RR42_RS10850	0.51	-1.1
2,321,749	+		RR42_RS10850	0.56	-0.1
2,321,749	+		RR42_RS10850	0.56	-1.6
2,321,749	+		RR42_RS10850	0.56	-0.8
2,321,749	+		RR42_RS10850	0.56	-0.5
2,321,749	+		RR42_RS10850	0.56	-0.8
2,321,749	+		RR42_RS10850	0.56	+0.3
2,321,750	-		RR42_RS10850	0.56	+0.5
2,321,750	-		RR42_RS10850	0.56	-1.0
2,321,750	-		RR42_RS10850	0.56	-1.7
2,321,750	-		RR42_RS10850	0.56	-0.3
2,321,867	-		RR42_RS10850	0.59	-1.1
2,322,854	+		RR42_RS10850	0.86	+0.1
2,322,855	-		RR42_RS10850	0.87	-0.6
2,322,855	-		RR42_RS10850	0.87	-1.4
2,322,855	-		RR42_RS10850	0.87	+1.3
2,323,366	+				-0.2
2,323,367	-				-0.2
2,323,384	+				+0.7
2,323,384	+				+0.3
2,323,385	-				-0.5
2,323,385	-				-0.4
2,323,434	+				-0.3
2,323,434	+				+0.1
2,323,435	-				-0.2
2,323,541	+				-0.1
2,323,541	+				+1.2
2,323,542	-				+1.5
2,323,542	-				-0.1
2,323,542	-				+0.6
2,323,542	-				+0.2
2,323,542	-				+0.3
2,323,544	+				-0.8
2,323,544	+				+1.1
2,323,544	+				-0.1
2,323,634	-				-0.4
2,323,890	-		RR42_RS10855	0.22	+1.3