Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10350

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,214,011	+		RR42_RS10345	0.25	+0.2
2,214,123	+		RR42_RS10345	0.35	+0.1
2,214,282	+		RR42_RS10345	0.50	-1.6
2,214,283	-		RR42_RS10345	0.50	+0.7
2,214,466	+		RR42_RS10345	0.67	+0.4
2,214,467	-		RR42_RS10345	0.67	+0.2
2,214,467	-		RR42_RS10345	0.67	-1.6
2,214,619	-		RR42_RS10345	0.81	-0.3
2,214,797	+				-0.0
2,214,797	+				+1.3
2,214,797	+				+0.3
2,214,798	-				-0.8
2,214,801	+				-1.8
2,214,848	-				-0.7
2,214,942	+				-0.5
2,214,942	+				+0.8
2,214,943	-				+0.1
2,214,943	-				+0.2
2,214,943	-				-0.5
2,214,946	+				-1.1
2,214,946	+				-1.6
2,214,946	+				-2.3
2,214,947	-				+0.6
2,214,950	+				+0.8
2,215,004	-				+1.1
2,215,004	-				-1.2
2,215,125	-				+0.8
2,215,426	+		RR42_RS10350	0.12	+0.7
2,215,427	-		RR42_RS10350	0.12	-0.1
2,215,427	-		RR42_RS10350	0.12	+1.7
2,215,439	-		RR42_RS10350	0.13	-0.2
2,215,555	+		RR42_RS10350	0.16	-0.3
2,215,556	-		RR42_RS10350	0.16	-0.3
2,215,812	-		RR42_RS10350	0.23	+0.8
2,215,983	+		RR42_RS10350	0.28	+1.3
2,216,267	+		RR42_RS10350	0.36	-0.9
2,216,268	-		RR42_RS10350	0.36	+0.7
2,216,415	+		RR42_RS10350	0.41	-0.5
2,216,505	-		RR42_RS10350	0.43	-0.5
2,216,572	-		RR42_RS10350	0.45	-1.1
2,216,744	-		RR42_RS10350	0.50	+0.5
2,216,875	-		RR42_RS10350	0.54	+0.0
2,216,875	-		RR42_RS10350	0.54	-2.3
2,216,875	-		RR42_RS10350	0.54	+0.6
2,216,884	+		RR42_RS10350	0.54	-0.5
2,216,884	+		RR42_RS10350	0.54	-0.8
2,216,885	-		RR42_RS10350	0.54	-0.1
2,217,101	-		RR42_RS10350	0.60	-0.7
2,217,101	-		RR42_RS10350	0.60	-2.1
2,217,101	-		RR42_RS10350	0.60	+0.6
2,217,128	+		RR42_RS10350	0.61	+0.1
2,217,128	+		RR42_RS10350	0.61	-0.6
2,217,243	-		RR42_RS10350	0.64	-0.6
2,217,275	-		RR42_RS10350	0.65	-1.8
2,217,530	-		RR42_RS10350	0.73	+0.7
2,217,659	+		RR42_RS10350	0.76	-1.3
2,218,472	-				-0.3
2,218,610	+				+1.3
2,218,611	-				+1.0
2,218,810	-		RR42_RS10355	0.33	+1.2
2,218,947	+		RR42_RS10355	0.62	-1.1
2,218,971	+		RR42_RS10355	0.67	+0.3
2,218,971	+		RR42_RS10355	0.67	+0.4
2,218,971	+		RR42_RS10355	0.67	+0.3
2,219,091	+				-1.2
2,219,190	+				+0.5
2,219,250	+				+0.6
2,219,311	-				-1.6
2,219,316	+				-0.7
2,219,319	+				+0.8
2,219,319	+				-3.1
2,219,373	+		RR42_RS10360	0.14	-0.9
2,219,374	-		RR42_RS10360	0.14	-0.3
2,219,374	-		RR42_RS10360	0.14	-0.5
2,219,375	+		RR42_RS10360	0.14	+1.2
2,219,376	-		RR42_RS10360	0.14	-0.8
2,219,376	-		RR42_RS10360	0.14	+0.8
2,219,376	-		RR42_RS10360	0.14	+0.7
2,219,377	+		RR42_RS10360	0.14	+0.9
2,219,377	+		RR42_RS10360	0.14	+0.1
2,219,377	+		RR42_RS10360	0.14	-0.2
2,219,378	-		RR42_RS10360	0.14	-0.4
2,219,378	-		RR42_RS10360	0.14	+0.4
2,219,378	-		RR42_RS10360	0.14	+1.4
2,219,386	-		RR42_RS10360	0.15	-0.9