Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10345

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,212,872	+		RR42_RS10340	0.10	+0.7
2,213,045	-		RR42_RS10340	0.32	+0.7
2,213,045	-		RR42_RS10340	0.32	-0.6
2,213,508	+				-0.7
2,213,509	-				-0.6
2,213,592	-				-2.4
2,213,647	+				-0.7
2,213,648	-				-0.1
2,213,648	-				-1.8
2,213,648	-				-0.6
2,213,648	-				+2.1
2,213,691	+				-0.2
2,213,793	-				+0.5
2,213,902	+		RR42_RS10345	0.14	-2.5
2,213,902	+		RR42_RS10345	0.14	-0.7
2,213,903	-		RR42_RS10345	0.14	+0.7
2,213,945	-		RR42_RS10345	0.18	-1.4
2,213,956	+		RR42_RS10345	0.19	+0.2
2,214,011	+		RR42_RS10345	0.25	+0.2
2,214,123	+		RR42_RS10345	0.35	+0.1
2,214,282	+		RR42_RS10345	0.50	-1.6
2,214,283	-		RR42_RS10345	0.50	+0.7
2,214,466	+		RR42_RS10345	0.67	+0.4
2,214,467	-		RR42_RS10345	0.67	+0.2
2,214,467	-		RR42_RS10345	0.67	-1.6
2,214,619	-		RR42_RS10345	0.81	-0.3
2,214,797	+				-0.0
2,214,797	+				+1.3
2,214,797	+				+0.3
2,214,798	-				-0.8
2,214,801	+				-1.8
2,214,848	-				-0.7
2,214,942	+				-0.5
2,214,942	+				+0.8
2,214,943	-				+0.1
2,214,943	-				+0.2
2,214,943	-				-0.5
2,214,946	+				-1.1
2,214,946	+				-1.6
2,214,946	+				-2.3
2,214,947	-				+0.6
2,214,950	+				+0.8
2,215,004	-				+1.1
2,215,004	-				-1.2
2,215,125	-				+0.8
2,215,426	+		RR42_RS10350	0.12	+0.7
2,215,427	-		RR42_RS10350	0.12	-0.1
2,215,427	-		RR42_RS10350	0.12	+1.7
2,215,439	-		RR42_RS10350	0.13	-0.2
2,215,555	+		RR42_RS10350	0.16	-0.3
2,215,556	-		RR42_RS10350	0.16	-0.3
2,215,812	-		RR42_RS10350	0.23	+0.8