Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10185

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,179,622	-		RR42_RS10180	0.53	-0.6
2,179,654	+		RR42_RS10180	0.56	+0.7
2,179,655	-		RR42_RS10180	0.56	-0.4
2,179,758	+		RR42_RS10180	0.64	+0.1
2,179,900	-		RR42_RS10180	0.75	+0.6
2,179,900	-		RR42_RS10180	0.75	+1.6
2,179,975	+		RR42_RS10180	0.81	-3.1
2,179,975	+		RR42_RS10180	0.81	-0.8
2,179,976	-		RR42_RS10180	0.81	+3.3
2,179,993	+		RR42_RS10180	0.83	+0.3
2,180,024	-		RR42_RS10180	0.85	-1.6
2,180,046	-		RR42_RS10180	0.87	+0.6
2,180,046	-		RR42_RS10180	0.87	-0.1
2,180,063	-		RR42_RS10180	0.88	-2.1
2,180,063	-		RR42_RS10180	0.88	+0.3
2,180,182	+				+0.0
2,180,182	+				-1.3
2,180,183	-				-1.1
2,180,317	+				+0.8
2,180,318	-				-1.9
2,180,318	-				+1.2
2,180,411	+				-0.4
2,180,501	+		RR42_RS10185	0.15	+0.3
2,180,502	-		RR42_RS10185	0.16	+0.2
2,180,627	+		RR42_RS10185	0.25	+0.7
2,180,628	-		RR42_RS10185	0.25	-0.2
2,180,694	+		RR42_RS10185	0.30	+0.2
2,180,841	-		RR42_RS10185	0.41	-0.1
2,180,883	+		RR42_RS10185	0.44	-0.9
2,180,921	+		RR42_RS10185	0.47	-0.0
2,180,921	+		RR42_RS10185	0.47	-0.1
2,180,921	+		RR42_RS10185	0.47	-0.9
2,180,948	+		RR42_RS10185	0.49	-0.6
2,180,948	+		RR42_RS10185	0.49	+1.2
2,180,972	-		RR42_RS10185	0.51	+0.7
2,180,972	-		RR42_RS10185	0.51	+0.4
2,181,043	+		RR42_RS10185	0.56	-0.4
2,181,062	+		RR42_RS10185	0.58	-0.6
2,181,062	+		RR42_RS10185	0.58	+0.2
2,181,132	+		RR42_RS10185	0.63	+0.5
2,181,133	-		RR42_RS10185	0.63	+0.8
2,181,133	-		RR42_RS10185	0.63	-0.2
2,181,133	-		RR42_RS10185	0.63	+0.4
2,181,133	-		RR42_RS10185	0.63	+2.0
2,181,146	+		RR42_RS10185	0.64	-0.9
2,181,171	-		RR42_RS10185	0.66	+1.9
2,181,212	+		RR42_RS10185	0.69	+0.3
2,181,212	+		RR42_RS10185	0.69	-0.1
2,181,222	-		RR42_RS10185	0.70	+0.6
2,181,222	-		RR42_RS10185	0.70	-0.7
2,181,222	-		RR42_RS10185	0.70	-0.2
2,181,222	-		RR42_RS10185	0.70	+0.4
2,181,276	-		RR42_RS10185	0.74	+0.4
2,181,276	-		RR42_RS10185	0.74	+0.2
2,181,276	-		RR42_RS10185	0.74	-0.8
2,181,276	-		RR42_RS10185	0.74	-1.0
2,181,276	-		RR42_RS10185	0.74	+0.9
2,181,284	+		RR42_RS10185	0.75	-1.1
2,181,284	+		RR42_RS10185	0.75	+0.6
2,181,293	+		RR42_RS10185	0.75	-0.7
2,181,294	-		RR42_RS10185	0.75	-0.6
2,181,452	+		RR42_RS10185	0.87	-0.3
2,181,491	+				+1.2
2,181,492	-				+0.7
2,181,492	-				-1.5
2,181,497	+				-0.0
2,181,498	-				+1.0
2,181,508	-				-0.7
2,181,922	+				-0.9
2,181,923	-				+0.9
2,181,983	+		RR42_RS10190	0.13	-0.8
2,181,983	+		RR42_RS10190	0.13	-0.4
2,181,984	-		RR42_RS10190	0.13	-0.0
2,181,987	+		RR42_RS10190	0.14	-0.3
2,181,988	-		RR42_RS10190	0.14	-0.3
2,182,149	+		RR42_RS10190	0.39	+0.1
2,182,165	+		RR42_RS10190	0.42	+0.5
2,182,166	-		RR42_RS10190	0.42	-0.2
2,182,166	-		RR42_RS10190	0.42	-1.9
2,182,166	-		RR42_RS10190	0.42	-1.3
2,182,166	-		RR42_RS10190	0.42	+0.6
2,182,213	+		RR42_RS10190	0.49	-0.5
2,182,235	-		RR42_RS10190	0.52	-2.1
2,182,359	+		RR42_RS10190	0.72	+0.5
2,182,556	+				+0.5
2,182,556	+				-0.2
2,182,557	-				-1.0
2,182,557	-				-0.0
2,182,557	-				+0.9