Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10020

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,140,158	-		RR42_RS10015	0.50	-0.9
2,140,186	-		RR42_RS10015	0.52	-0.5
2,140,186	-		RR42_RS10015	0.52	-1.3
2,140,214	+		RR42_RS10015	0.54	-0.3
2,140,215	-		RR42_RS10015	0.54	+0.3
2,140,287	+		RR42_RS10015	0.60	-0.6
2,140,287	+		RR42_RS10015	0.60	+0.0
2,140,288	-		RR42_RS10015	0.60	-2.5
2,140,409	+		RR42_RS10015	0.69	-1.0
2,140,409	+		RR42_RS10015	0.69	+0.7
2,140,410	-		RR42_RS10015	0.69	+0.9
2,140,537	+		RR42_RS10015	0.79	-2.9
2,140,537	+		RR42_RS10015	0.79	+0.4
2,140,538	-		RR42_RS10015	0.79	-1.1
2,140,662	-		RR42_RS10015	0.89	+0.1
2,140,662	-		RR42_RS10015	0.89	-0.4
2,140,662	-		RR42_RS10015	0.89	+0.7
2,140,839	+				-1.6
2,140,839	+				-0.4
2,140,839	+				-1.2
2,140,839	+				+0.9
2,140,839	+				-0.5
2,140,839	+				+0.4
2,140,840	-				+0.8
2,140,884	+				+0.9
2,140,983	+		RR42_RS10020	0.34	-0.3
2,140,983	+		RR42_RS10020	0.34	-2.8
2,141,091	+		RR42_RS10020	0.65	-1.6
2,141,100	+		RR42_RS10020	0.68	-2.1
2,141,101	-		RR42_RS10020	0.68	-0.5
2,141,101	-		RR42_RS10020	0.68	+1.3
2,141,101	-		RR42_RS10020	0.68	+0.4
2,141,307	+				-0.6
2,141,428	+		RR42_RS10025	0.46	+0.5
2,141,428	+		RR42_RS10025	0.46	+1.9
2,141,428	+		RR42_RS10025	0.46	-0.9
2,141,428	+		RR42_RS10025	0.46	+4.4
2,141,429	-		RR42_RS10025	0.46	+1.8
2,141,429	-		RR42_RS10025	0.46	+1.7
2,141,449	-		RR42_RS10025	0.54	-0.3
2,141,526	+		RR42_RS10025	0.82	-0.3
2,141,526	+		RR42_RS10025	0.82	-0.1
2,141,527	-		RR42_RS10025	0.82	+2.0
2,141,527	-		RR42_RS10025	0.82	-0.4
2,141,528	+		RR42_RS10025	0.82	+1.7
2,141,528	+		RR42_RS10025	0.82	-0.1
2,141,528	+		RR42_RS10025	0.82	-0.6
2,141,528	+		RR42_RS10025	0.82	-0.6
2,141,528	+		RR42_RS10025	0.82	+0.4
2,141,529	-		RR42_RS10025	0.83	+0.1
2,141,529	-		RR42_RS10025	0.83	+0.8
2,141,529	-		RR42_RS10025	0.83	+1.4
2,141,529	-		RR42_RS10025	0.83	+0.5
2,141,529	-		RR42_RS10025	0.83	+0.4
2,141,529	-		RR42_RS10025	0.83	-0.3
2,141,668	+				+1.3
2,141,977	+		RR42_RS10030	0.19	+0.5
2,141,977	+		RR42_RS10030	0.19	-0.9
2,141,977	+		RR42_RS10030	0.19	-0.0
2,141,978	-		RR42_RS10030	0.20	-0.6
2,141,978	-		RR42_RS10030	0.20	+0.7
2,142,001	+		RR42_RS10030	0.26	-1.9
2,142,058	+		RR42_RS10030	0.40	-0.1
2,142,058	+		RR42_RS10030	0.40	+0.7
2,142,058	+		RR42_RS10030	0.40	-0.3
2,142,058	+		RR42_RS10030	0.40	-0.1
2,142,058	+		RR42_RS10030	0.40	-1.2
2,142,059	-		RR42_RS10030	0.41	-0.4
2,142,193	+		RR42_RS10030	0.75	-0.8
2,142,193	+		RR42_RS10030	0.75	-1.0
2,142,194	-		RR42_RS10030	0.75	+0.4
2,142,194	-		RR42_RS10030	0.75	+0.4