Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09725

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,068,022	-		RR42_RS09720	0.82	+0.1
2,068,066	+		RR42_RS09720	0.84	-0.5
2,068,451	+				-0.3
2,068,451	+				-0.4
2,068,451	+				-1.4
2,068,451	+				-2.5
2,068,452	-				-0.4
2,068,452	-				+0.0
2,068,452	-				-0.3
2,068,452	-				+0.3
2,068,494	+				-0.3
2,068,508	+				-0.1
2,068,508	+				-0.1
2,068,702	-				+0.4
2,068,702	-				+0.5
2,068,769	+				+1.1
2,068,769	+				+1.0
2,068,770	-				-0.1
2,068,770	-				+0.5
2,069,076	+		RR42_RS09725	0.12	+0.0
2,069,077	-		RR42_RS09725	0.12	-1.3
2,069,170	-		RR42_RS09725	0.19	+1.3
2,069,214	+		RR42_RS09725	0.22	-1.9
2,069,214	+		RR42_RS09725	0.22	+1.3
2,069,714	-		RR42_RS09725	0.57	+0.4
2,069,715	+		RR42_RS09725	0.57	-0.4
2,069,715	+		RR42_RS09725	0.57	-0.2
2,069,716	-		RR42_RS09725	0.57	-1.2
2,069,794	-		RR42_RS09725	0.63	-1.3
2,069,794	-		RR42_RS09725	0.63	+1.0
2,070,314	-				-1.2
2,070,402	+				-0.4
2,070,403	-				+0.4
2,070,667	-		RR42_RS09730	0.21	-0.1
2,070,753	+		RR42_RS09730	0.29	-2.2
2,070,753	+		RR42_RS09730	0.29	+0.1
2,070,994	+		RR42_RS09730	0.50	+0.2
2,070,995	-		RR42_RS09730	0.51	+0.4
2,071,146	+		RR42_RS09730	0.64	-0.5
2,071,146	+		RR42_RS09730	0.64	+0.5
2,071,157	+		RR42_RS09730	0.65	+0.7
2,071,157	+		RR42_RS09730	0.65	+0.5
2,071,264	+		RR42_RS09730	0.74	-1.8
2,071,264	+		RR42_RS09730	0.74	-1.2
2,071,264	+		RR42_RS09730	0.74	+1.0
2,071,265	-		RR42_RS09730	0.74	-0.6
2,071,265	-		RR42_RS09730	0.74	+1.8
2,071,265	-		RR42_RS09730	0.74	+0.9
2,071,266	+		RR42_RS09730	0.75	+1.1
2,071,266	+		RR42_RS09730	0.75	-0.1