Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09585

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,028,627	+				-1.0
2,028,628	-				-1.8
2,028,628	-				-2.1
2,028,686	-				-0.2
2,028,686	-				-1.6
2,028,688	-				+0.1
2,028,688	-				-1.0
2,028,688	-				-0.9
2,028,688	-				-1.3
2,028,814	+		RR42_RS09575	0.15	-0.2
2,028,814	+		RR42_RS09575	0.15	-0.0
2,028,814	+		RR42_RS09575	0.15	-0.4
2,028,814	+		RR42_RS09575	0.15	-0.1
2,028,815	-		RR42_RS09575	0.15	-1.0
2,029,056	+				-2.0
2,029,057	-				-0.4
2,029,237	-		RR42_RS09580	0.65	-1.1
2,029,460	-				+1.5
2,029,727	-		RR42_RS09585	0.16	-0.8
2,029,805	+		RR42_RS09585	0.26	-0.6
2,030,128	+		RR42_RS09585	0.69	-0.7
2,030,129	-		RR42_RS09585	0.69	-2.5
2,030,129	-		RR42_RS09585	0.69	-0.4
2,030,351	-				+0.5
2,030,453	+				+1.1
2,030,454	-				-0.6
2,030,649	+		RR42_RS09590	0.41	-2.4
2,030,649	+		RR42_RS09590	0.41	-0.3
2,030,650	-		RR42_RS09590	0.42	+0.7
2,030,981	+				+0.5
2,031,022	+				+0.4
2,031,022	+				-0.9
2,031,023	-				+0.4
2,031,178	+				-0.7
2,031,179	-				+0.0
2,031,179	-				-2.5
2,031,215	+				-0.2
2,031,216	-				-0.6
2,031,272	+				+0.5
2,031,273	-				-1.0