Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09570

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,026,038	+		RR42_RS09560	0.39	-0.9
2,026,039	-		RR42_RS09560	0.39	+0.3
2,026,039	-		RR42_RS09560	0.39	-0.5
2,026,131	-		RR42_RS09560	0.54	-0.6
2,026,306	+		RR42_RS09560	0.83	-1.0
2,026,307	-		RR42_RS09560	0.83	-1.5
2,026,393	-				+0.3
2,026,443	+				+1.0
2,026,444	-				+0.0
2,026,447	-				-1.2
2,026,594	+		RR42_RS09565	0.32	-0.5
2,026,594	+		RR42_RS09565	0.32	-0.8
2,026,595	-		RR42_RS09565	0.33	+0.6
2,027,308	+		RR42_RS09570	0.20	+0.8
2,027,710	+		RR42_RS09570	0.46	-0.5
2,027,758	+		RR42_RS09570	0.49	+1.0
2,027,759	-		RR42_RS09570	0.49	-0.3
2,027,762	+		RR42_RS09570	0.49	-0.8
2,028,338	-		RR42_RS09570	0.85	-0.7
2,028,451	+				+0.5
2,028,452	-				-0.1
2,028,452	-				-0.0
2,028,452	-				-0.3
2,028,627	+				-1.0
2,028,628	-				-1.8
2,028,628	-				-2.1
2,028,686	-				-0.2
2,028,686	-				-1.6
2,028,688	-				+0.1
2,028,688	-				-1.0
2,028,688	-				-0.9
2,028,688	-				-1.3
2,028,814	+		RR42_RS09575	0.15	-0.2
2,028,814	+		RR42_RS09575	0.15	-0.0
2,028,814	+		RR42_RS09575	0.15	-0.4
2,028,814	+		RR42_RS09575	0.15	-0.1
2,028,815	-		RR42_RS09575	0.15	-1.0
2,029,056	+				-2.0
2,029,057	-				-0.4
2,029,237	-		RR42_RS09580	0.65	-1.1
2,029,460	-				+1.5