Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08490

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,787,373	+		RR42_RS08485	0.64	-1.5
1,787,424	+		RR42_RS08485	0.66	-0.5
1,787,478	+		RR42_RS08485	0.68	-1.0
1,787,647	+		RR42_RS08485	0.74	+0.5
1,787,647	+		RR42_RS08485	0.74	+0.7
1,787,764	+		RR42_RS08485	0.78	+0.9
1,787,764	+		RR42_RS08485	0.78	+0.8
1,787,765	-		RR42_RS08485	0.78	+0.4
1,787,843	-		RR42_RS08485	0.81	+0.8
1,787,935	-		RR42_RS08485	0.85	+1.3
1,787,997	+		RR42_RS08485	0.87	+0.7
1,788,012	+		RR42_RS08485	0.88	+0.1
1,788,060	+		RR42_RS08485	0.89	+0.8
1,788,464	+		RR42_RS08490	0.18	+0.4
1,788,465	-		RR42_RS08490	0.18	+2.3
1,788,656	-		RR42_RS08490	0.53	+0.8
1,788,662	+		RR42_RS08490	0.54	+0.7
1,788,662	+		RR42_RS08490	0.54	-0.1
1,788,662	+		RR42_RS08490	0.54	+1.2
1,788,882	-				+1.9
1,789,092	+		RR42_RS08495	0.27	+0.4
1,789,093	-		RR42_RS08495	0.27	+1.7
1,789,162	-		RR42_RS08495	0.55	-0.2
1,789,162	-		RR42_RS08495	0.55	+0.4
1,789,191	+		RR42_RS08495	0.67	+0.2
1,789,192	-		RR42_RS08495	0.67	+1.3
1,789,194	-		RR42_RS08495	0.68	+0.5
1,789,214	+		RR42_RS08495	0.76	+0.3
1,789,215	-		RR42_RS08495	0.76	+0.1
1,789,215	-		RR42_RS08495	0.76	+2.0
1,789,235	-		RR42_RS08495	0.84	+0.9
1,789,332	+				+0.1
1,789,333	-				+1.3
1,789,389	+				-0.2
1,789,389	+				-0.8
1,789,534	+		RR42_RS08500	0.31	-0.2
1,789,534	+		RR42_RS08500	0.31	+0.4
1,789,642	+		RR42_RS08500	0.52	-0.4
1,789,642	+		RR42_RS08500	0.52	+1.8
1,789,642	+		RR42_RS08500	0.52	-0.2
1,789,643	-		RR42_RS08500	0.52	+0.1
1,789,720	+		RR42_RS08500	0.68	-0.4
1,789,720	+		RR42_RS08500	0.68	+0.5
1,789,720	+		RR42_RS08500	0.68	-1.3
1,789,721	-		RR42_RS08500	0.68	+0.3
1,789,721	-		RR42_RS08500	0.68	+0.4
1,789,749	+		RR42_RS08500	0.73	-0.2
1,789,749	+		RR42_RS08500	0.73	+0.1
1,789,749	+		RR42_RS08500	0.73	-0.8
1,789,759	+		RR42_RS08500	0.75	+1.3
1,789,854	+				+0.4
1,789,855	-				+0.2