Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06585

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06575 and RR42_RS06580 are separated by 62 nucleotidesRR42_RS06580 and RR42_RS06585 are separated by 15 nucleotidesRR42_RS06585 and RR42_RS06590 are separated by 21 nucleotidesRR42_RS06590 and RR42_RS06595 are separated by 67 nucleotidesRR42_RS06595 and RR42_RS06600 are separated by 367 nucleotides RR42_RS06575: RR42_RS06575 - alpha/beta hydrolase, at 1,436,778 to 1,437,665 _RS06575 RR42_RS06580: RR42_RS06580 - aminoacrylate peracid reductase, at 1,437,728 to 1,438,090 _RS06580 RR42_RS06585: RR42_RS06585 - GTP pyrophosphokinase, at 1,438,106 to 1,440,328 _RS06585 RR42_RS06590: RR42_RS06590 - tRNA-Val, at 1,440,350 to 1,440,426 _RS06590 RR42_RS06595: RR42_RS06595 - tRNA-Val, at 1,440,494 to 1,440,570 _RS06595 RR42_RS06600: RR42_RS06600 - threonyl-tRNA synthetase, at 1,440,938 to 1,442,845 _RS06600 Position (kb) 1438 1439 1440 1441Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1437.222 kb on + strand, within RR42_RS06575at 1437.222 kb on + strand, within RR42_RS06575at 1437.223 kb on - strand, within RR42_RS06575at 1437.223 kb on - strand, within RR42_RS06575at 1437.388 kb on - strand, within RR42_RS06575at 1437.499 kb on + strand, within RR42_RS06575at 1437.639 kb on - strandat 1437.717 kb on - strandat 1437.780 kb on - strand, within RR42_RS06580at 1437.803 kb on + strand, within RR42_RS06580at 1437.803 kb on + strand, within RR42_RS06580at 1437.804 kb on - strand, within RR42_RS06580at 1437.804 kb on - strand, within RR42_RS06580at 1438.006 kb on + strand, within RR42_RS06580at 1438.053 kb on - strand, within RR42_RS06580at 1438.411 kb on + strand, within RR42_RS06585at 1438.411 kb on + strand, within RR42_RS06585at 1438.637 kb on + strand, within RR42_RS06585at 1438.637 kb on + strand, within RR42_RS06585at 1438.721 kb on - strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.725 kb on - strand, within RR42_RS06585at 1438.725 kb on - strand, within RR42_RS06585at 1438.725 kb on - strand, within RR42_RS06585at 1438.775 kb on + strand, within RR42_RS06585at 1438.775 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.913 kb on + strand, within RR42_RS06585at 1438.913 kb on + strand, within RR42_RS06585at 1438.914 kb on - strand, within RR42_RS06585at 1438.962 kb on - strand, within RR42_RS06585at 1438.987 kb on + strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1439.021 kb on + strand, within RR42_RS06585at 1439.021 kb on + strand, within RR42_RS06585at 1439.022 kb on - strand, within RR42_RS06585at 1439.022 kb on - strand, within RR42_RS06585at 1439.162 kb on + strand, within RR42_RS06585at 1439.189 kb on - strand, within RR42_RS06585at 1439.339 kb on + strand, within RR42_RS06585at 1439.339 kb on + strand, within RR42_RS06585at 1439.339 kb on + strand, within RR42_RS06585at 1439.339 kb on + strand, within RR42_RS06585at 1439.339 kb on + strand, within RR42_RS06585at 1439.339 kb on + strand, within RR42_RS06585at 1439.339 kb on + strand, within RR42_RS06585at 1439.340 kb on - strand, within RR42_RS06585at 1439.340 kb on - strand, within RR42_RS06585at 1439.340 kb on - strand, within RR42_RS06585at 1439.340 kb on - strand, within RR42_RS06585at 1439.340 kb on - strand, within RR42_RS06585at 1439.340 kb on - strand, within RR42_RS06585at 1439.340 kb on - strand, within RR42_RS06585at 1439.405 kb on + strand, within RR42_RS06585at 1439.408 kb on + strand, within RR42_RS06585at 1439.408 kb on + strand, within RR42_RS06585at 1439.408 kb on + strand, within RR42_RS06585at 1439.409 kb on - strand, within RR42_RS06585at 1439.417 kb on - strand, within RR42_RS06585at 1439.417 kb on - strand, within RR42_RS06585at 1439.417 kb on - strand, within RR42_RS06585at 1439.565 kb on - strand, within RR42_RS06585at 1440.070 kb on + strand, within RR42_RS06585at 1440.349 kb on + strandat 1440.357 kb on + strandat 1440.422 kb on + strandat 1440.439 kb on + strandat 1440.488 kb on + strandat 1440.566 kb on + strandat 1440.576 kb on + strandat 1440.576 kb on + strandat 1440.576 kb on + strandat 1440.582 kb on + strandat 1440.667 kb on + strandat 1440.781 kb on + strandat 1440.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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1,437,222 + RR42_RS06575 0.50 +1.1
1,437,222 + RR42_RS06575 0.50 +0.3
1,437,223 - RR42_RS06575 0.50 -1.7
1,437,223 - RR42_RS06575 0.50 -3.3
1,437,388 - RR42_RS06575 0.69 -3.0
1,437,499 + RR42_RS06575 0.81 +0.1
1,437,639 - -3.9
1,437,717 - -4.0
1,437,780 - RR42_RS06580 0.14 -1.7
1,437,803 + RR42_RS06580 0.21 -1.4
1,437,803 + RR42_RS06580 0.21 -2.3
1,437,804 - RR42_RS06580 0.21 -3.4
1,437,804 - RR42_RS06580 0.21 -2.8
1,438,006 + RR42_RS06580 0.77 -2.5
1,438,053 - RR42_RS06580 0.90 -1.5
1,438,411 + RR42_RS06585 0.14 -2.4
1,438,411 + RR42_RS06585 0.14 -5.3
1,438,637 + RR42_RS06585 0.24 -2.1
1,438,637 + RR42_RS06585 0.24 -3.1
1,438,721 - RR42_RS06585 0.28 -0.6
1,438,724 + RR42_RS06585 0.28 -3.4
1,438,724 + RR42_RS06585 0.28 -3.2
1,438,724 + RR42_RS06585 0.28 -1.4
1,438,724 + RR42_RS06585 0.28 -2.1
1,438,725 - RR42_RS06585 0.28 -1.7
1,438,725 - RR42_RS06585 0.28 -1.1
1,438,725 - RR42_RS06585 0.28 -3.0
1,438,775 + RR42_RS06585 0.30 -2.8
1,438,775 + RR42_RS06585 0.30 -3.8
1,438,858 + RR42_RS06585 0.34 -3.1
1,438,858 + RR42_RS06585 0.34 -3.9
1,438,858 + RR42_RS06585 0.34 -3.4
1,438,858 + RR42_RS06585 0.34 -1.9
1,438,858 + RR42_RS06585 0.34 -3.0
1,438,858 + RR42_RS06585 0.34 -3.0
1,438,858 + RR42_RS06585 0.34 -2.9
1,438,858 + RR42_RS06585 0.34 -0.4
1,438,858 + RR42_RS06585 0.34 -3.8
1,438,859 - RR42_RS06585 0.34 -1.6
1,438,859 - RR42_RS06585 0.34 -2.8
1,438,859 - RR42_RS06585 0.34 -1.7
1,438,859 - RR42_RS06585 0.34 -1.7
1,438,859 - RR42_RS06585 0.34 -1.2
1,438,859 - RR42_RS06585 0.34 -2.1
1,438,859 - RR42_RS06585 0.34 -1.4
1,438,859 - RR42_RS06585 0.34 -0.1
1,438,859 - RR42_RS06585 0.34 -2.7
1,438,863 - RR42_RS06585 0.34 -3.3
1,438,863 - RR42_RS06585 0.34 -4.5
1,438,863 - RR42_RS06585 0.34 -4.3
1,438,863 - RR42_RS06585 0.34 -3.6
1,438,913 + RR42_RS06585 0.36 -2.6
1,438,913 + RR42_RS06585 0.36 -3.6
1,438,914 - RR42_RS06585 0.36 -1.9
1,438,962 - RR42_RS06585 0.39 -0.1
1,438,987 + RR42_RS06585 0.40 -2.3
1,438,988 - RR42_RS06585 0.40 -3.9
1,438,988 - RR42_RS06585 0.40 -2.6
1,438,988 - RR42_RS06585 0.40 -2.2
1,438,988 - RR42_RS06585 0.40 -2.6
1,439,021 + RR42_RS06585 0.41 -3.4
1,439,021 + RR42_RS06585 0.41 -4.4
1,439,022 - RR42_RS06585 0.41 -3.5
1,439,022 - RR42_RS06585 0.41 -4.4
1,439,162 + RR42_RS06585 0.48 -3.0
1,439,189 - RR42_RS06585 0.49 -2.4
1,439,339 + RR42_RS06585 0.55 -5.5
1,439,339 + RR42_RS06585 0.55 -4.4
1,439,339 + RR42_RS06585 0.55 -1.4
1,439,339 + RR42_RS06585 0.55 -2.1
1,439,339 + RR42_RS06585 0.55 -3.0
1,439,339 + RR42_RS06585 0.55 -1.1
1,439,339 + RR42_RS06585 0.55 -3.1
1,439,340 - RR42_RS06585 0.56 -2.5
1,439,340 - RR42_RS06585 0.56 -2.4
1,439,340 - RR42_RS06585 0.56 -3.2
1,439,340 - RR42_RS06585 0.56 -3.3
1,439,340 - RR42_RS06585 0.56 -1.9
1,439,340 - RR42_RS06585 0.56 -5.2
1,439,340 - RR42_RS06585 0.56 -1.4
1,439,405 + RR42_RS06585 0.58 -1.8
1,439,408 + RR42_RS06585 0.59 -1.6
1,439,408 + RR42_RS06585 0.59 -1.9
1,439,408 + RR42_RS06585 0.59 -3.6
1,439,409 - RR42_RS06585 0.59 -3.6
1,439,417 - RR42_RS06585 0.59 -2.6
1,439,417 - RR42_RS06585 0.59 -3.1
1,439,417 - RR42_RS06585 0.59 -3.6
1,439,565 - RR42_RS06585 0.66 -0.9
1,440,070 + RR42_RS06585 0.88 -3.1
1,440,349 + -2.4
1,440,357 + -0.3
1,440,422 + -1.0
1,440,439 + +0.7
1,440,488 + -2.3
1,440,566 + +0.5
1,440,576 + -0.4
1,440,576 + -0.3
1,440,576 + -0.3
1,440,582 + +0.4
1,440,667 + +0.9
1,440,781 + +0.3
1,440,869 + -0.5

Or see this region's nucleotide sequence