Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06570

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,435,309	+				+0.0
1,435,309	+				+0.7
1,435,310	-				+0.9
1,435,310	-				-0.2
1,435,658	-		RR42_RS06565	0.74	+0.1
1,435,658	-		RR42_RS06565	0.74	+0.5
1,435,967	-		RR42_RS06570	0.22	+1.9
1,436,119	-		RR42_RS06570	0.41	+0.5
1,436,119	-		RR42_RS06570	0.41	+0.1
1,436,119	-		RR42_RS06570	0.41	+0.1
1,436,119	-		RR42_RS06570	0.41	+1.4
1,436,570	-				-0.1
1,436,686	+				+0.1
1,436,687	-				-1.1
1,436,687	-				-1.7
1,436,701	-				+0.4
1,436,760	+				+0.7
1,436,760	+				+0.3
1,436,848	-				-3.3
1,436,848	-				-2.1
1,436,956	-		RR42_RS06575	0.20	-4.8
1,436,956	-		RR42_RS06575	0.20	-2.1
1,436,978	-		RR42_RS06575	0.23	-2.3
1,436,978	-		RR42_RS06575	0.23	-3.8
1,437,022	-		RR42_RS06575	0.27	-0.6
1,437,036	+				-1.1
1,437,037	-		RR42_RS06575	0.29	-1.1
1,437,037	-		RR42_RS06575	0.29	-2.3
1,437,037	-		RR42_RS06575	0.29	-3.3
1,437,037	-		RR42_RS06575	0.29	-1.6
1,437,037	-		RR42_RS06575	0.29	-1.6
1,437,222	+		RR42_RS06575	0.50	+1.1
1,437,222	+		RR42_RS06575	0.50	+0.3
1,437,223	-		RR42_RS06575	0.50	-1.7
1,437,223	-		RR42_RS06575	0.50	-3.3
1,437,388	-		RR42_RS06575	0.69	-3.0
1,437,499	+		RR42_RS06575	0.81	+0.1