Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06545

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,431,656	+				+1.4
1,431,916	+		RR42_RS06540	0.33	-0.8
1,431,916	+		RR42_RS06540	0.33	-0.5
1,431,916	+		RR42_RS06540	0.33	-0.1
1,431,916	+		RR42_RS06540	0.33	-1.4
1,431,970	+		RR42_RS06540	0.40	+0.1
1,431,970	+		RR42_RS06540	0.40	+0.7
1,431,970	+		RR42_RS06540	0.40	+1.7
1,431,970	+		RR42_RS06540	0.40	+0.0
1,431,971	-		RR42_RS06540	0.41	-0.0
1,431,985	+		RR42_RS06540	0.43	+2.1
1,432,045	+		RR42_RS06540	0.51	-0.1
1,432,387	+				+0.1
1,432,587	+				+2.3
1,432,587	+				+0.5
1,432,588	-				+0.1
1,432,611	-				+0.0
1,432,678	+		RR42_RS06545	0.20	-0.0
1,432,679	-		RR42_RS06545	0.20	-0.8
1,433,145	+				-0.2
1,433,145	+				+1.2
1,433,145	+				-0.4
1,433,163	-				-0.1
1,433,173	+				+0.2
1,433,174	-				-0.5
1,433,174	-				-0.6
1,433,198	-		RR42_RS06550	0.14	-0.7
1,433,446	+		RR42_RS06550	0.59	-0.7
1,433,446	+		RR42_RS06550	0.59	+0.6
1,433,447	-		RR42_RS06550	0.59	+0.3
1,433,515	+		RR42_RS06550	0.72	-1.3
1,433,515	+		RR42_RS06550	0.72	+0.4
1,433,515	+		RR42_RS06550	0.72	-0.8
1,433,516	-		RR42_RS06550	0.72	+1.5
1,433,520	+		RR42_RS06550	0.73	+0.7
1,433,520	+		RR42_RS06550	0.73	-1.6
1,433,520	+		RR42_RS06550	0.73	+0.4
1,433,520	+		RR42_RS06550	0.73	-0.8
1,433,520	+		RR42_RS06550	0.73	-1.7
1,433,653	+				-0.6
1,433,675	+				+1.1
1,433,675	+				-0.7
1,433,676	-				-0.1
1,433,679	+				-0.3
1,433,679	+				+0.8
1,433,679	+				-0.5
1,433,679	+				+0.1
1,433,679	+				-0.7
1,433,680	-				+0.1
1,433,680	-				+0.0
1,433,680	-				-0.6
1,433,680	-				-1.4
1,433,685	+				-0.7
1,433,685	+				-1.5
1,433,686	-				-1.3
1,433,690	-				-1.4
1,433,715	+				+0.6
1,433,715	+				-1.6
1,433,715	+				-0.2
1,433,765	+				+0.9