Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06410 and RR42_RS06415 are separated by 2 nucleotides RR42_RS06415 and RR42_RS06420 are separated by 341 nucleotides
RR42_RS06410: RR42_RS06410 - monooxygenase, at 1,404,659 to 1,405,882
_RS06410
RR42_RS06415: RR42_RS06415 - glyoxalase, at 1,405,885 to 1,406,373
_RS06415
RR42_RS06420: RR42_RS06420 - DSBA oxidoreductase, at 1,406,715 to 1,407,365
_RS06420
Position (kb) 1405
1406
1407 Strain fitness (log2 ratio) -1
0
1 at 1405.368 kb on + strand, within RR42_RS06410 at 1405.369 kb on - strand, within RR42_RS06410 at 1405.378 kb on - strand, within RR42_RS06410 at 1405.517 kb on + strand, within RR42_RS06410 at 1405.517 kb on + strand, within RR42_RS06410 at 1405.518 kb on - strand, within RR42_RS06410 at 1405.518 kb on - strand, within RR42_RS06410 at 1405.537 kb on - strand, within RR42_RS06410 at 1405.565 kb on + strand, within RR42_RS06410 at 1405.572 kb on + strand, within RR42_RS06410 at 1405.572 kb on + strand, within RR42_RS06410 at 1405.573 kb on - strand, within RR42_RS06410 at 1405.778 kb on + strand at 1405.778 kb on + strand at 1405.779 kb on - strand at 1405.779 kb on - strand at 1406.240 kb on + strand, within RR42_RS06415 at 1406.240 kb on + strand, within RR42_RS06415 at 1406.240 kb on + strand, within RR42_RS06415 at 1406.386 kb on + strand at 1406.387 kb on - strand at 1406.395 kb on - strand at 1406.517 kb on + strand at 1406.518 kb on - strand at 1406.551 kb on + strand at 1406.559 kb on + strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.574 kb on - strand at 1406.682 kb on - strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.743 kb on - strand at 1406.835 kb on + strand, within RR42_RS06420 at 1406.836 kb on - strand, within RR42_RS06420 at 1406.985 kb on + strand, within RR42_RS06420 at 1406.986 kb on - strand, within RR42_RS06420 at 1406.986 kb on - strand, within RR42_RS06420 at 1407.103 kb on - strand, within RR42_RS06420 at 1407.139 kb on + strand, within RR42_RS06420 at 1407.185 kb on - strand, within RR42_RS06420 at 1407.185 kb on - strand, within RR42_RS06420 at 1407.185 kb on - strand, within RR42_RS06420 at 1407.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 1,405,368 + RR42_RS06410 0.58 +0.7 1,405,369 - RR42_RS06410 0.58 -0.1 1,405,378 - RR42_RS06410 0.59 +0.6 1,405,517 + RR42_RS06410 0.70 -1.4 1,405,517 + RR42_RS06410 0.70 -0.5 1,405,518 - RR42_RS06410 0.70 -0.4 1,405,518 - RR42_RS06410 0.70 -0.0 1,405,537 - RR42_RS06410 0.72 +0.9 1,405,565 + RR42_RS06410 0.74 -0.4 1,405,572 + RR42_RS06410 0.75 -0.1 1,405,572 + RR42_RS06410 0.75 +0.2 1,405,573 - RR42_RS06410 0.75 +0.0 1,405,778 + +0.4 1,405,778 + +0.7 1,405,779 - -0.0 1,405,779 - -0.1 1,406,240 + RR42_RS06415 0.73 +0.9 1,406,240 + RR42_RS06415 0.73 -0.1 1,406,240 + RR42_RS06415 0.73 -0.8 1,406,386 + -0.4 1,406,387 - +0.6 1,406,395 - +0.6 1,406,517 + -0.1 1,406,518 - -0.1 1,406,551 + +0.4 1,406,559 + +0.9 1,406,560 - +1.3 1,406,560 - -1.6 1,406,560 - +0.0 1,406,560 - -0.6 1,406,560 - +0.2 1,406,574 - +0.8 1,406,682 - -1.0 1,406,742 + -0.9 1,406,742 + +0.9 1,406,742 + +0.2 1,406,742 + -0.3 1,406,742 + +0.9 1,406,743 - +0.3 1,406,835 + RR42_RS06420 0.18 -0.5 1,406,836 - RR42_RS06420 0.19 -0.1 1,406,985 + RR42_RS06420 0.41 -1.1 1,406,986 - RR42_RS06420 0.42 +0.6 1,406,986 - RR42_RS06420 0.42 -0.5 1,407,103 - RR42_RS06420 0.60 -1.1 1,407,139 + RR42_RS06420 0.65 +0.9 1,407,185 - RR42_RS06420 0.72 -0.9 1,407,185 - RR42_RS06420 0.72 +0.1 1,407,185 - RR42_RS06420 0.72 -1.4 1,407,367 - -1.0
Or see this region's nucleotide sequence