Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06340

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,390,117	-				+1.4
1,390,522	-		RR42_RS06335	0.81	+0.9
1,390,522	-		RR42_RS06335	0.81	+1.0
1,390,605	-				+1.6
1,390,605	-				+0.7
1,390,699	-				-0.7
1,390,713	-		RR42_RS06340	0.11	-0.3
1,390,825	-		RR42_RS06340	0.30	-0.3
1,391,028	+		RR42_RS06340	0.65	+1.1
1,391,029	-		RR42_RS06340	0.65	+1.0
1,391,030	+		RR42_RS06340	0.65	+0.1
1,391,030	+		RR42_RS06340	0.65	-3.0
1,391,031	-		RR42_RS06340	0.65	+0.2
1,391,031	-		RR42_RS06340	0.65	-1.4
1,391,031	-		RR42_RS06340	0.65	-0.8
1,391,031	-		RR42_RS06340	0.65	+0.5
1,391,031	-		RR42_RS06340	0.65	+0.3
1,391,048	+		RR42_RS06340	0.68	+1.1
1,391,048	+		RR42_RS06340	0.68	-0.5
1,391,212	+				+1.9
1,391,212	+				+1.7
1,391,213	-				-0.5
1,391,213	-				+0.3
1,391,300	+				-0.2
1,391,301	-				-1.1
1,391,301	-				-0.0
1,391,304	+				-1.7
1,391,304	+				+0.2
1,391,304	+				-0.2
1,391,304	+				+0.9
1,391,305	-				-0.2
1,391,454	+		RR42_RS06345	0.22	-2.8
1,391,454	+		RR42_RS06345	0.22	-3.2
1,391,500	-		RR42_RS06345	0.28	-0.9
1,391,581	-		RR42_RS06345	0.40	-2.1
1,391,581	-		RR42_RS06345	0.40	-4.7
1,391,767	-		RR42_RS06345	0.66	-3.4
1,391,979	-				-2.5
1,392,003	+				-3.3
1,392,003	+				-3.5
1,392,004	-				+0.2
1,392,004	-				-0.4
1,392,020	-				-0.6
1,392,035	-				-0.2
1,392,163	+				+0.8
1,392,163	+				-0.4
1,392,163	+				-0.5
1,392,163	+				+1.9