Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05960

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,310,579	-				+0.4
1,310,598	+				+0.8
1,310,598	+				+1.5
1,310,598	+				-0.7
1,310,598	+				-1.5
1,310,599	-				-0.2
1,310,599	-				+0.7
1,310,599	-				+1.7
1,310,609	+				-0.3
1,310,609	+				+0.6
1,310,609	+				+0.2
1,310,610	-				-2.2
1,310,642	+				-1.0
1,310,695	+				+0.7
1,310,708	+				-0.9
1,310,933	+		RR42_RS05955	0.60	+0.2
1,311,120	-				-0.2
1,311,192	+				+0.0
1,311,192	+				-3.0
1,311,195	+				+1.4
1,311,195	+				-1.1
1,311,196	-				+1.2
1,311,196	-				+0.4
1,311,385	+		RR42_RS05960	0.10	+0.2
1,311,407	-		RR42_RS05960	0.13	-0.0
1,311,532	+		RR42_RS05960	0.27	+0.0
1,311,532	+		RR42_RS05960	0.27	+1.6
1,311,533	-		RR42_RS05960	0.27	-1.5
1,311,533	-		RR42_RS05960	0.27	+0.7
1,311,604	+		RR42_RS05960	0.35	-0.7
1,311,604	+		RR42_RS05960	0.35	-1.3
1,311,605	-		RR42_RS05960	0.35	+1.0
1,311,605	-		RR42_RS05960	0.35	-0.3
1,311,605	-		RR42_RS05960	0.35	+0.2
1,311,775	+		RR42_RS05960	0.53	-1.8
1,311,776	-		RR42_RS05960	0.54	-0.6
1,311,784	+		RR42_RS05960	0.54	+1.0
1,311,785	-		RR42_RS05960	0.55	+0.3
1,311,785	-		RR42_RS05960	0.55	+1.0
1,311,868	+		RR42_RS05960	0.64	+0.6
1,311,869	-		RR42_RS05960	0.64	-0.2
1,311,869	-		RR42_RS05960	0.64	-0.2
1,311,962	+		RR42_RS05960	0.74	-1.2
1,312,236	+				+0.4
1,312,237	-				-0.1
1,312,237	-				+0.3
1,312,237	-				+1.1
1,312,240	+				+0.2
1,312,240	+				-0.8
1,312,240	+				+0.6
1,312,241	-				+0.1
1,312,241	-				+3.6
1,312,241	-				-0.6
1,312,329	+				+1.0
1,312,329	+				+1.0
1,312,330	-				-0.6
1,312,667	-		RR42_RS05965	0.66	+1.4
1,312,889	-				+0.1
1,312,889	-				+1.6
1,312,889	-				+2.3
1,312,970	+				-1.0
1,313,030	+		RR42_RS05970	0.14	-1.6
1,313,030	+		RR42_RS05970	0.14	+0.3
1,313,031	-		RR42_RS05970	0.14	-0.0
1,313,163	+		RR42_RS05970	0.35	-0.4
1,313,163	+				+1.0
1,313,163	+		RR42_RS05970	0.35	+0.5
1,313,164	-		RR42_RS05970	0.35	+0.8
1,313,164	-		RR42_RS05970	0.35	-0.3
1,313,164	-		RR42_RS05970	0.35	+0.6