Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05805

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,275,921	-		RR42_RS05800	0.43	+0.5
1,275,921	-		RR42_RS05800	0.43	-0.3
1,275,921	-		RR42_RS05800	0.43	-1.6
1,275,921	-		RR42_RS05800	0.43	+0.9
1,276,058	+		RR42_RS05800	0.57	-0.0
1,276,096	-		RR42_RS05800	0.60	-0.3
1,276,096	-		RR42_RS05800	0.60	-2.6
1,276,146	-		RR42_RS05800	0.66	-0.5
1,276,160	+		RR42_RS05800	0.67	-0.5
1,276,211	+		RR42_RS05800	0.72	-0.7
1,276,394	+				+0.2
1,276,394	+				+0.1
1,276,473	+				+0.6
1,276,474	-				-2.5
1,276,635	-				-0.5
1,276,642	+				+0.5
1,276,650	+				+0.7
1,276,654	+				-0.9
1,276,654	+				-0.0
1,276,654	+				-0.7
1,276,654	+				+0.3
1,276,655	-				-0.1
1,276,655	-				+0.1
1,276,655	-				-1.3
1,276,665	+				+0.9
1,276,665	+				+0.3
1,276,666	-				+0.5
1,276,666	-				+0.1
1,276,666	-				+0.5
1,276,666	-				-1.1
1,276,713	-				-0.9
1,276,860	-		RR42_RS05805	0.23	+0.7
1,277,107	+		RR42_RS05805	0.50	+1.0
1,277,107	+		RR42_RS05805	0.50	-0.1
1,277,108	-		RR42_RS05805	0.50	-0.3
1,277,108	-		RR42_RS05805	0.50	-1.5
1,277,108	-		RR42_RS05805	0.50	+0.4
1,277,132	+		RR42_RS05805	0.53	+0.8
1,277,132	+		RR42_RS05805	0.53	+0.7
1,277,133	-		RR42_RS05805	0.53	+0.1
1,277,133	-		RR42_RS05805	0.53	-1.1
1,277,133	-		RR42_RS05805	0.53	+1.0
1,277,133	-		RR42_RS05805	0.53	-0.5
1,277,469	-				-2.4
1,277,469	-				+1.4
1,277,469	-				+0.3
1,277,470	-				+0.4
1,277,576	-				+0.5
1,277,576	-				-0.6
1,277,586	+				+0.0
1,277,587	-				+1.5
1,277,587	-				+0.5
1,277,625	+				+0.4
1,277,625	+				+0.6
1,277,897	-				+0.4
1,277,897	-				-0.5
1,277,989	+				+0.1
1,277,990	-				+1.1
1,277,992	+				+1.6
1,277,992	+				+0.9
1,277,993	-				-1.6
1,277,993	-				+1.1
1,277,993	-				+0.1
1,277,993	-				-1.2
1,277,999	-				-0.1
1,278,096	-				-0.5
1,278,211	+		RR42_RS05810	0.20	+1.5
1,278,354	-		RR42_RS05810	0.45	-1.0
1,278,522	-		RR42_RS05810	0.75	-2.8