Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05430

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,197,416	+		RR42_RS05420	0.44	-1.7
1,197,417	-		RR42_RS05420	0.44	-1.3
1,197,417	-		RR42_RS05420	0.44	-1.9
1,197,471	-		RR42_RS05420	0.51	-0.9
1,197,857	-				-1.7
1,197,857	-				+0.8
1,197,876	+				-2.2
1,197,876	+				+1.0
1,197,877	-				+0.2
1,197,899	-		RR42_RS05425	0.10	+1.0
1,197,982	+		RR42_RS05425	0.29	-1.0
1,197,982	+		RR42_RS05425	0.29	-0.4
1,197,983	-		RR42_RS05425	0.29	+1.5
1,197,983	-		RR42_RS05425	0.29	+1.0
1,197,983	-		RR42_RS05425	0.29	+0.3
1,197,983	-		RR42_RS05425	0.29	+0.6
1,197,983	-		RR42_RS05425	0.29	+1.1
1,197,983	-		RR42_RS05425	0.29	+0.8
1,197,983	-		RR42_RS05425	0.29	+1.1
1,197,983	-		RR42_RS05425	0.29	-1.2
1,198,406	-		RR42_RS05430	0.21	+0.8
1,198,567	+		RR42_RS05430	0.50	-0.6
1,198,619	-		RR42_RS05430	0.59	-2.3
1,198,626	-		RR42_RS05430	0.60	-3.0
1,198,667	+		RR42_RS05430	0.67	-0.2
1,198,668	-		RR42_RS05430	0.67	-1.6
1,198,832	+				+1.6
1,198,832	+				-1.5
1,198,901	-				+1.1
1,198,934	+				-2.3
1,198,934	+				-1.3
1,198,935	-				-0.3
1,198,941	+				-0.3
1,198,941	+				-1.6
1,198,942	-				+0.7
1,199,130	+				+0.4
1,199,130	+				-0.2
1,199,130	+				-0.4