Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05265

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,161,694	+		RR42_RS05260	0.56	-0.9
1,161,695	-		RR42_RS05260	0.56	-0.6
1,161,760	+		RR42_RS05260	0.61	+3.2
1,161,974	-		RR42_RS05260	0.76	+0.7
1,162,210	+				+1.6
1,162,210	+				-0.2
1,162,210	+				+0.1
1,162,210	+				+0.1
1,162,210	+				-1.0
1,162,211	-				+0.8
1,162,211	-				+1.3
1,162,211	-				-0.2
1,162,211	-				+0.4
1,162,211	-				-0.3
1,162,304	+				-0.2
1,162,305	-				+1.8
1,162,305	-				+0.8
1,162,371	-				-1.4
1,162,371	-				-1.8
1,162,371	-				+0.0
1,162,462	+				+1.6
1,162,462	+				+1.7
1,162,462	+				+0.4
1,162,462	+				+0.1
1,162,463	-				+0.0
1,162,463	-				+1.2
1,162,463	-				-1.6
1,162,463	-				+0.4
1,163,095	+		RR42_RS05265	0.85	-0.1
1,163,095	+		RR42_RS05265	0.85	-1.2
1,163,095	+		RR42_RS05265	0.85	+0.2
1,163,096	-		RR42_RS05265	0.85	-1.1
1,163,107	+		RR42_RS05265	0.87	-0.0
1,163,107	+		RR42_RS05265	0.87	+0.4
1,163,107	+		RR42_RS05265	0.87	-0.7
1,163,108	-		RR42_RS05265	0.87	+0.1
1,163,108	-		RR42_RS05265	0.87	+0.9
1,163,108	-		RR42_RS05265	0.87	-0.4
1,163,108	-		RR42_RS05265	0.87	+0.8
1,163,218	+				-0.7
1,163,219	-				-1.0
1,163,313	+				-1.4
1,163,431	+				+0.2
1,163,432	-				-1.6
1,163,432	-				+0.6
1,163,467	+				-1.7
1,163,468	-				+0.2
1,163,540	+				+0.0
1,163,540	+				+1.6
1,163,698	+		RR42_RS05270	0.51	+0.8
1,163,699	-		RR42_RS05270	0.51	-0.0
1,163,699	-		RR42_RS05270	0.51	+0.0
1,163,699	-		RR42_RS05270	0.51	-2.2
1,163,815	+		RR42_RS05270	0.84	-0.1
1,163,857	+				-0.4
1,163,858	-				-0.6
1,163,858	-				-1.5
1,163,869	+				-0.1
1,163,869	+				-0.6
1,163,870	-				-0.2
1,163,912	+				+0.0
1,163,912	+				-1.6
1,163,912	+				+0.5
1,163,913	-				+0.5
1,163,913	-				-0.1
1,163,915	-				-0.1
1,163,915	-				-1.3
1,163,915	-				+0.4
1,163,991	-				+0.6
1,164,092	+		RR42_RS05275	0.16	+0.3
1,164,107	+		RR42_RS05275	0.17	+0.4
1,164,153	-		RR42_RS05275	0.21	+0.8
1,164,164	+		RR42_RS05275	0.22	-1.3
1,164,164	+		RR42_RS05275	0.22	+1.3
1,164,165	-		RR42_RS05275	0.22	+1.2
1,164,165	-		RR42_RS05275	0.22	+0.0