Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05260

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,160,116	+		RR42_RS05255	0.22	+0.3
1,160,117	-		RR42_RS05255	0.22	+1.0
1,160,214	-		RR42_RS05255	0.32	+0.8
1,160,214	-		RR42_RS05255	0.32	+0.6
1,160,214	-		RR42_RS05255	0.32	+1.6
1,160,216	-		RR42_RS05255	0.33	+1.0
1,160,291	-		RR42_RS05255	0.41	+1.1
1,160,294	-		RR42_RS05255	0.41	+0.0
1,160,306	-		RR42_RS05255	0.42	+3.7
1,160,306	-		RR42_RS05255	0.42	+1.4
1,160,306	-		RR42_RS05255	0.42	-1.0
1,160,459	-		RR42_RS05255	0.58	+0.6
1,160,459	-		RR42_RS05255	0.58	-0.2
1,160,632	+		RR42_RS05255	0.76	+0.4
1,160,633	-		RR42_RS05255	0.77	-1.0
1,160,750	-		RR42_RS05255	0.89	-1.3
1,160,750	-		RR42_RS05255	0.89	+0.9
1,160,839	+				-0.1
1,160,905	+				+0.8
1,160,906	-				-1.1
1,160,906	-				+0.3
1,161,053	-		RR42_RS05260	0.11	+0.0
1,161,053	-		RR42_RS05260	0.11	-0.1
1,161,358	+		RR42_RS05260	0.32	+1.0
1,161,359	-		RR42_RS05260	0.32	-0.8
1,161,694	+		RR42_RS05260	0.56	-0.9
1,161,695	-		RR42_RS05260	0.56	-0.6
1,161,760	+		RR42_RS05260	0.61	+3.2
1,161,974	-		RR42_RS05260	0.76	+0.7
1,162,210	+				+1.6
1,162,210	+				-0.2
1,162,210	+				+0.1
1,162,210	+				+0.1
1,162,210	+				-1.0
1,162,211	-				+0.8
1,162,211	-				+1.3
1,162,211	-				-0.2
1,162,211	-				+0.4
1,162,211	-				-0.3
1,162,304	+				-0.2
1,162,305	-				+1.8
1,162,305	-				+0.8
1,162,371	-				-1.4
1,162,371	-				-1.8
1,162,371	-				+0.0
1,162,462	+				+1.6
1,162,462	+				+1.7
1,162,462	+				+0.4
1,162,462	+				+0.1
1,162,463	-				+0.0
1,162,463	-				+1.2
1,162,463	-				-1.6
1,162,463	-				+0.4
1,163,095	+		RR42_RS05265	0.85	-0.1
1,163,095	+		RR42_RS05265	0.85	-1.2
1,163,095	+		RR42_RS05265	0.85	+0.2
1,163,096	-		RR42_RS05265	0.85	-1.1
1,163,107	+		RR42_RS05265	0.87	-0.0
1,163,107	+		RR42_RS05265	0.87	+0.4
1,163,107	+		RR42_RS05265	0.87	-0.7
1,163,108	-		RR42_RS05265	0.87	+0.1
1,163,108	-		RR42_RS05265	0.87	+0.9
1,163,108	-		RR42_RS05265	0.87	-0.4
1,163,108	-		RR42_RS05265	0.87	+0.8
1,163,218	+				-0.7
1,163,219	-				-1.0