Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05245

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,157,211	+				+1.4
1,157,211	+				+0.8
1,157,211	+				-0.0
1,157,211	+				-0.3
1,157,212	-				+0.6
1,157,212	-				+1.2
1,157,212	-				-0.0
1,157,212	-				-1.3
1,157,212	-				+0.0
1,157,212	-				+0.4
1,157,217	+				+0.3
1,157,217	+				+0.3
1,157,218	-				-0.7
1,157,218	-				-0.8
1,157,218	-				+1.2
1,157,331	+				+1.2
1,157,331	+				-1.9
1,157,534	-				+0.4
1,157,534	-				+0.1
1,157,538	-				-2.0
1,157,562	+				+0.0
1,157,562	+				+1.3
1,157,749	+		RR42_RS05240	0.33	+0.5
1,157,749	+		RR42_RS05240	0.33	-0.4
1,157,750	-		RR42_RS05240	0.33	-0.5
1,157,804	+		RR42_RS05240	0.55	+1.1
1,157,804	+		RR42_RS05240	0.55	+0.1
1,157,804	+		RR42_RS05240	0.55	-0.3
1,158,080	+				-0.6
1,158,086	+				-1.0
1,158,095	+				+0.0
1,158,096	-				-0.5
1,158,123	-				+0.4
1,158,186	-		RR42_RS05245	0.16	+0.2
1,158,192	-		RR42_RS05245	0.16	-1.0
1,158,204	+		RR42_RS05245	0.17	+0.8
1,158,296	+		RR42_RS05245	0.26	+0.0
1,158,296	+		RR42_RS05245	0.26	+0.9
1,158,297	-		RR42_RS05245	0.26	-1.7
1,158,335	+		RR42_RS05245	0.29	-0.9
1,158,335	+		RR42_RS05245	0.29	+1.3
1,158,336	-		RR42_RS05245	0.29	+1.3
1,158,336	-		RR42_RS05245	0.29	+0.2
1,158,336	-		RR42_RS05245	0.29	-0.1
1,158,474	-		RR42_RS05245	0.42	-2.5
1,158,474	-		RR42_RS05245	0.42	-2.8
1,158,474	-		RR42_RS05245	0.42	-2.7
1,158,474	-		RR42_RS05245	0.42	-0.2
1,158,534	-		RR42_RS05245	0.48	+0.6
1,158,575	+		RR42_RS05245	0.51	-1.8
1,158,576	-		RR42_RS05245	0.52	-2.8
1,158,650	+		RR42_RS05245	0.58	-0.7
1,158,680	+		RR42_RS05245	0.61	+0.7
1,158,680	+		RR42_RS05245	0.61	+0.7
1,158,680	+		RR42_RS05245	0.61	-0.0
1,158,680	+		RR42_RS05245	0.61	-0.6
1,158,680	+		RR42_RS05245	0.61	-0.6
1,158,681	-		RR42_RS05245	0.61	-0.1
1,158,681	-		RR42_RS05245	0.61	-0.0
1,158,722	+		RR42_RS05245	0.65	-0.2
1,158,722	+		RR42_RS05245	0.65	+0.3
1,158,914	+		RR42_RS05245	0.83	-1.3
1,158,947	+		RR42_RS05245	0.86	+1.3
1,158,947	+		RR42_RS05245	0.86	-0.4
1,158,947	+		RR42_RS05245	0.86	-0.4
1,159,008	-				+0.2
1,159,096	-				-0.1
1,159,141	+				+0.2
1,159,163	-				-0.2
1,159,165	+				-0.8
1,159,165	+				+0.0
1,159,299	+				+0.5
1,159,321	+				-0.5
1,159,390	+				+0.3
1,159,390	+				+0.5
1,159,391	-				+0.1
1,159,391	-				+0.1
1,159,391	-				+0.0
1,159,391	-				+0.3
1,159,391	-				+1.1
1,159,554	-		RR42_RS05250	0.34	+1.2
1,159,820	+		RR42_RS05250	0.85	+0.5
1,159,820	+		RR42_RS05250	0.85	+1.5
1,159,820	+		RR42_RS05250	0.85	+0.5
1,159,821	-		RR42_RS05250	0.85	-0.8
1,159,821	-		RR42_RS05250	0.85	+0.3
1,159,821	-		RR42_RS05250	0.85	+0.8
1,159,821	-		RR42_RS05250	0.85	+0.7
1,159,821	-		RR42_RS05250	0.85	-0.1
1,159,821	-		RR42_RS05250	0.85	+0.7
1,159,821	-		RR42_RS05250	0.85	+0.3
1,159,883	+				+0.0
1,159,883	+				+0.8
1,159,884	-				+0.5