Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05020

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,107,104	+		RR42_RS05010	0.45	-0.1
1,107,227	+		RR42_RS05010	0.76	+0.2
1,107,227	+		RR42_RS05010	0.76	+0.4
1,107,227	+		RR42_RS05010	0.76	-1.3
1,107,228	-		RR42_RS05010	0.77	+1.4
1,107,228	-		RR42_RS05010	0.77	+0.9
1,107,302	+				-0.9
1,107,348	+				-0.0
1,107,349	-				+0.9
1,107,467	+		RR42_RS05015	0.14	-1.1
1,107,468	-		RR42_RS05015	0.14	+0.1
1,107,657	+		RR42_RS05015	0.47	-0.3
1,107,672	+		RR42_RS05015	0.50	+0.7
1,107,672	+		RR42_RS05015	0.50	+0.4
1,107,745	-		RR42_RS05015	0.63	+0.1
1,107,745	-		RR42_RS05015	0.63	+0.6
1,107,784	-		RR42_RS05015	0.69	+1.0
1,107,802	-		RR42_RS05015	0.73	+0.8
1,107,873	-		RR42_RS05015	0.85	-0.7
1,107,876	+		RR42_RS05015	0.86	-0.7
1,107,876	+		RR42_RS05015	0.86	+0.5
1,107,876	+		RR42_RS05015	0.86	-0.2
1,107,876	+		RR42_RS05015	0.86	+0.1
1,107,876	+		RR42_RS05015	0.86	-1.0
1,107,877	-		RR42_RS05015	0.86	+0.6
1,108,056	+				+3.3
1,108,056	+				+4.4
1,108,145	+		RR42_RS05020	0.14	+4.7
1,108,146	-		RR42_RS05020	0.14	+5.7
1,108,146	-		RR42_RS05020	0.14	+7.3
1,108,146	-		RR42_RS05020	0.14	+4.6
1,108,246	+		RR42_RS05020	0.26	+4.4
1,108,246	+		RR42_RS05020	0.26	+5.7
1,108,247	-		RR42_RS05020	0.26	+5.4
1,108,247	-		RR42_RS05020	0.26	+5.8
1,108,279	-		RR42_RS05020	0.30	+4.9
1,108,279	-		RR42_RS05020	0.30	+4.2
1,108,391	+		RR42_RS05020	0.44	+5.1
1,108,392	-		RR42_RS05020	0.44	+5.6
1,108,604	+		RR42_RS05020	0.69	+5.1
1,108,604	+		RR42_RS05020	0.69	+4.4
1,108,605	-		RR42_RS05020	0.69	+6.6
1,108,605	-		RR42_RS05020	0.69	+4.8
1,108,646	+		RR42_RS05020	0.74	+5.8
1,108,647	-		RR42_RS05020	0.75	+4.3
1,108,647	-		RR42_RS05020	0.75	+5.4
1,108,647	-		RR42_RS05020	0.75	+4.2
1,108,647	-		RR42_RS05020	0.75	+3.4
1,108,757	+		RR42_RS05020	0.88	+4.5
1,108,758	-		RR42_RS05020	0.88	+4.9
1,108,816	-				+5.2
1,109,094	-				-0.6
1,109,094	-				+1.6
1,109,105	+				+1.0
1,109,343	-		RR42_RS05025	0.26	+0.0
1,109,343	-		RR42_RS05025	0.26	-0.9
1,109,343	-		RR42_RS05025	0.26	+0.6
1,109,348	+		RR42_RS05025	0.27	-0.6
1,109,348	+		RR42_RS05025	0.27	+2.5
1,109,376	-		RR42_RS05025	0.30	-0.4
1,109,642	+		RR42_RS05025	0.58	+0.8
1,109,648	+		RR42_RS05025	0.58	+2.5