Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04975

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,098,160	+				-2.0
1,098,250	+		RR42_RS04970	0.15	-4.6
1,098,250	+		RR42_RS04970	0.15	-3.4
1,098,250	+		RR42_RS04970	0.15	-2.9
1,098,250	+		RR42_RS04970	0.15	-2.1
1,098,250	+		RR42_RS04970	0.15	-2.6
1,098,251	-		RR42_RS04970	0.15	-3.9
1,098,251	-		RR42_RS04970	0.15	-3.3
1,098,251	-		RR42_RS04970	0.15	-3.8
1,098,251	-		RR42_RS04970	0.15	-2.0
1,098,251	-		RR42_RS04970	0.15	-4.5
1,098,254	+		RR42_RS04970	0.15	-1.0
1,098,255	-		RR42_RS04970	0.16	-2.7
1,098,280	+		RR42_RS04970	0.18	-3.9
1,098,280	+		RR42_RS04970	0.18	-3.0
1,098,280	+		RR42_RS04970	0.18	-3.5
1,098,281	-		RR42_RS04970	0.18	-0.5
1,098,281	-		RR42_RS04970	0.18	-1.3
1,098,281	-		RR42_RS04970	0.18	-4.6
1,098,281	-		RR42_RS04970	0.18	-3.4
1,098,428	-		RR42_RS04970	0.35	-3.0
1,098,445	+		RR42_RS04970	0.37	-1.9
1,098,675	+		RR42_RS04970	0.62	-2.3
1,098,675	+		RR42_RS04970	0.62	-4.0
1,098,675	+		RR42_RS04970	0.62	-1.6
1,098,676	-		RR42_RS04970	0.62	-2.1
1,098,676	-		RR42_RS04970	0.62	-3.3
1,098,676	-		RR42_RS04970	0.62	-1.3
1,098,701	+		RR42_RS04970	0.65	-3.9
1,098,701	+		RR42_RS04970	0.65	-5.0
1,098,701	-		RR42_RS04970	0.65	-3.0
1,098,715	+		RR42_RS04970	0.66	-2.9
1,098,715	+		RR42_RS04970	0.66	-2.0
1,098,716	-		RR42_RS04970	0.67	-2.2
1,098,901	-		RR42_RS04970	0.87	-0.8
1,098,959	-				-2.3
1,098,961	+				-5.7
1,098,961	+				-3.9
1,098,962	-				-3.3
1,098,962	-				-5.0
1,098,962	-				-4.5
1,099,031	+				+0.6
1,099,032	-				-1.1
1,099,032	-				-0.7
1,099,032	-				+0.5
1,099,146	+				+0.7
1,099,147	-				-2.3
1,099,168	-				+1.3
1,099,168	-				+0.0
1,099,168	-				+0.4
1,099,168	-				-0.8
1,099,264	-		RR42_RS04975	0.11	-2.2
1,099,312	+		RR42_RS04975	0.14	-0.7
1,099,343	+		RR42_RS04975	0.16	-0.6
1,099,343	+		RR42_RS04975	0.16	+0.0
1,099,343	+		RR42_RS04975	0.16	-1.5
1,099,344	-		RR42_RS04975	0.16	-0.3
1,099,344	-		RR42_RS04975	0.16	-0.0
1,099,552	-		RR42_RS04975	0.30	+0.2
1,099,555	-		RR42_RS04975	0.30	-1.3
1,099,567	-		RR42_RS04975	0.31	-0.2
1,099,567	-		RR42_RS04975	0.31	+0.0
1,099,608	+		RR42_RS04975	0.34	+0.4
1,099,608	+		RR42_RS04975	0.34	+1.0
1,099,608	+		RR42_RS04975	0.34	+0.2
1,099,609	-		RR42_RS04975	0.34	+0.3
1,099,609	-		RR42_RS04975	0.34	+0.6
1,099,706	+		RR42_RS04975	0.41	-1.8
1,099,706	+		RR42_RS04975	0.41	+0.6
1,099,706	+		RR42_RS04975	0.41	+1.2
1,099,706	+		RR42_RS04975	0.41	-1.3
1,099,707	-		RR42_RS04975	0.41	+0.4
1,099,707	-		RR42_RS04975	0.41	+1.0
1,099,707	-		RR42_RS04975	0.41	-1.0
1,099,707	-		RR42_RS04975	0.41	-0.2
1,099,707	-		RR42_RS04975	0.41	+1.0
1,099,707	-		RR42_RS04975	0.41	+0.5
1,099,811	-		RR42_RS04975	0.48	+0.0
1,099,811	-		RR42_RS04975	0.48	-1.5
1,100,067	+		RR42_RS04975	0.65	+0.6
1,100,068	-		RR42_RS04975	0.65	+0.1
1,100,068	-		RR42_RS04975	0.65	-1.6
1,100,214	+		RR42_RS04975	0.75	+1.3
1,100,214	+		RR42_RS04975	0.75	+1.7
1,100,215	-		RR42_RS04975	0.75	-1.0
1,100,215	-		RR42_RS04975	0.75	-1.3
1,100,215	-		RR42_RS04975	0.75	+0.4
1,100,215	-		RR42_RS04975	0.75	+0.8
1,100,215	-		RR42_RS04975	0.75	+1.8
1,100,290	+		RR42_RS04975	0.80	-0.6
1,100,291	-		RR42_RS04975	0.80	+0.1
1,100,318	-		RR42_RS04975	0.82	-0.3
1,100,544	+				-0.2
1,100,544	+				+0.3
1,100,544	+				+1.0
1,100,545	-				+0.3
1,100,716	+				+0.2
1,100,717	-				-1.1
1,100,717	-				+0.0
1,100,721	+				-1.6
1,100,740	-				-0.2
1,100,740	-				-0.1
1,100,745	+				-0.0
1,100,746	-				+1.8
1,101,000	+		RR42_RS04980	0.53	-0.8
1,101,001	-		RR42_RS04980	0.53	+0.2